ggKbase home page

PLM3-1_170_b2_sep16_scaffold_2900

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2900_1
unknown

Not on your lists

comp(1..672)
DNA (672bp) protein (224aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2900_2
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

762..2435
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase (DAD) Tax=Thaumarchaeota archaeon N4 RepID=V6AT43_9ARCH
PLM3-1_170_b2_sep16_scaffold_2900_3

Not on your lists

comp(2438..2644)
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK74851.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2900_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(2853..3593)
DNA (741bp) protein (247aa)
integral membrane sensor signal transduction histidine kinase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2900_5
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

4023..4403
DNA (381bp) protein (127aa)
Chemotaxis protein CheY homolog Tax=Thaumarchaeota archaeon N4 RepID=V6ATQ5_9ARCH
Chemotaxis protein CheY homolog {ECO:0000313|EMBL:CDI05818.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
two-component response regulator involved in modulation of flagellar
PLM3-1_170_b2_sep16_scaffold_2900_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

4518..5942
DNA (1425bp) protein (475aa)
anthranilate synthase (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
anthranilate synthase (EC:4.1.3.27)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2900_7
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

5939..6532
DNA (594bp) protein (198aa)
Fragment of Anthranilate synthase {ECO:0000313|EMBL:CDI05683.1}; EC=4.1.3.27 {ECO:0000313|EMBL:CDI05683.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
trpG; Anthranilate synthase component 2 (EC:4.1.3.27)
Fragment of Anthranilate synthase Tax=Thaumarchaeota archaeon N4 RepID=V6ATC8_9ARCH
PLM3-1_170_b2_sep16_scaffold_2900_8

Not on your lists

6522..7568
DNA (1047bp) protein (349aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_75_C11.;"
Anthranilate phosphoribosyltransferase Tax=uncultured marine crenarchaeote HF4000_APKG6C9 RepID=B3T8W1_9ARCH
anthranilate phosphoribosyltransferase
PLM3-1_170_b2_sep16_scaffold_2900_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

7565..8338
DNA (774bp) protein (258aa)
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
trpC; Indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2900_10

Not on your lists

8335..9537
DNA (1203bp) protein (401aa)
tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain [EC:4.2.1.20] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
trpB; tryptophan synthase, beta subunit (EC:4.2.1.20)
Uncharacterized protein {ECO:0000313|EMBL:KKM07790.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b2_sep16_scaffold_2900_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

9518..10327
DNA (810bp) protein (270aa)
tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
tryptophan synthase subunit alpha
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2900_12
unknown

Not on your lists

10509..10667
DNA (159bp) protein (53aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2900_13
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

10664..13252
DNA (2589bp) protein (863aa)
Type II secretion system protein E Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CX43_9ARCH
Type II secretion system protein E {ECO:0000313|EMBL:EGP93845.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
type II secretion system protein
PLM3-1_170_b2_sep16_scaffold_2900_14
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

13258..14181
DNA (924bp) protein (308aa)
Type II secretion system F domain-containing protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B7P3_9ARCH
putative type II secretion system F domain protein
Putative type II secretion system F domain protein {ECO:0000313|EMBL:AJW70735.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_170_b2_sep16_scaffold_2900_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

14210..15676
DNA (1467bp) protein (489aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2900_16
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

15683..16090
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2ES56_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EPA05254.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
hypothetical protein
Displaying 16 items

View Taxonomy