ggKbase home page

PLM3-1_170_b2_sep16_scaffold_980

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_980_1

Not on your lists

comp(3..365)
DNA (363bp) protein (121aa)
Prephenate dehydrogenase (TyrA2) {ECO:0000313|EMBL:AIF13299.1}; EC=1.3.1.12 {ECO:0000313|EMBL:AIF13299.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_61_F08.;"
Prephenate dehydrogenase Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A228_NITMS
prephenate dehydrogenase
PLM3-1_170_b2_sep16_scaffold_980_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(367..1731)
DNA (1365bp) protein (455aa)
class I/II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Aminotransferase class I and II
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_3
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(1735..2832)
DNA (1098bp) protein (366aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
aroC; Chorismate synthase (EC:4.2.3.5)
Chorismate synthase Tax=Thaumarchaeota archaeon N4 RepID=V6AQN2_9ARCH
PLM3-1_170_b2_sep16_scaffold_980_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(2873..4141)
DNA (1269bp) protein (423aa)
3-phosphoshikimate 1-carboxyvinyltransferase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
3-phosphoshikimate 1-carboxyvinyltransferase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(4131..4985)
DNA (855bp) protein (285aa)
shikimate kinase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
shikimate kinase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_6
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(4987..5808)
DNA (822bp) protein (274aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase Tax=Thaumarchaeota archaeon N4 RepID=V6AQJ2_9ARCH
PLM3-1_170_b2_sep16_scaffold_980_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(5813..6487)
DNA (675bp) protein (225aa)
3-dehydroquinate dehydratase bin=bin2_Thaum tax=bin2_Thaum organism_group=Archaeon
3-dehydroquinate dehydratase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_8
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(6559..6984)
DNA (426bp) protein (142aa)
nitrogen regulatory protein P-II bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
nitrogen regulatory protein P-II
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_9
Marine Group I thaumarchaeote SCGC RSA3, Thaumarchaeota, Archaea

Not on your lists

7072..7926
DNA (855bp) protein (285aa)
Modification methylase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.113 {ECO:0000256|RuleBase:RU362026};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC RSA3.;"
putative N-4 cytosine-specific methyltransferase Tax=Candidatus Nitrosoarchaeum limnia RepID=UPI00026CE391
DNA modification methylase
PLM3-1_170_b2_sep16_scaffold_980_10
unknown

Not on your lists

comp(8287..8469)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_980_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(8505..9566)
DNA (1062bp) protein (354aa)
aroB; 3-dehydroquinate synthase (EC:1.4.1.24)
3-dehydroquinate synthase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_12
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9553..10341)
DNA (789bp) protein (263aa)
aroA; 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC:2.2.1.10)
phospho-2-dehydro-3-deoxyheptonate aldolase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_13
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10502..10975)
DNA (474bp) protein (158aa)
Putative transcription regulator Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CX50_9ARCH
Putative transcription regulator {ECO:0000313|EMBL:EGP93852.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_980_14
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

11214..12332
DNA (1119bp) protein (373aa)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
FO synthase subunit Tax=Thaumarchaeota archaeon N4 RepID=V6AQA1_9ARCH
Radical SAM protein
PLM3-1_170_b2_sep16_scaffold_980_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(12329..13771)
DNA (1443bp) protein (481aa)
UbiD family decarboxylase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_980_16
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(14113..14508)
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D1U5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EIJ65688.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_980_17

Not on your lists

14598..15107
DNA (510bp) protein (170aa)
Predicted protein Tax=Physcomitrella patens subsp. patens RepID=A9T2H2_PHYPA
Uncharacterized protein {ECO:0000313|EMBL:AIF22925.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote SAT1000_11_C10.;"
hypothetical protein
Displaying 17 items

View Taxonomy