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PLM3_30_b1_sep16_scaffold_451

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_451_1
unknown

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comp(35..181)
DNA (147bp) protein (49aa)
hypothetical protein
PLM3_30_b1_sep16_scaffold_451_2
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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616..1272
DNA (657bp) protein (219aa)
Putative SNF7 protein Tax=Candidatus Nitrososphaera gargensis RepID=K0IJ37_NITGG
conserved protein implicated in secretion
Conserved protein implicated in secretion {ECO:0000313|EMBL:AIF84271.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_451_3
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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1327..1662
DNA (336bp) protein (112aa)
Divalent cation tolerance protein, CutA1 family Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D5E9_9ARCH
Divalent cation tolerance protein, CutA1 family {ECO:0000313|EMBL:EIJ66942.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
divalent cation tolerance protein, CutA1 family
PLM3_30_b1_sep16_scaffold_451_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1685..2752)
DNA (1068bp) protein (356aa)
pelA; protein pelota (EC:3.1.-.-)
Protein pelota homolog {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00004956}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00011872};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Protein pelota homolog Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF42_NITGG
PLM3_30_b1_sep16_scaffold_451_5
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2791..3237)
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAP2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14970.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_451_6
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3516..4283)
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHL6_NITGG
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AIF84371.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_451_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4436..6148
DNA (1713bp) protein (571aa)
Radical SAM domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMX9_NITGG
Radical SAM domain protein {ECO:0000313|EMBL:AIC14967.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
radical SAM domain protein
PLM3_30_b1_sep16_scaffold_451_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6297..7160
DNA (864bp) protein (288aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:AFU59128.1}; EC=4.2.1.55 {ECO:0000313|EMBL:AFU59128.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
3-hydroxybutyryl-CoA dehydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ40_NITGG
PLM3_30_b1_sep16_scaffold_451_9

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comp(7193..8146)
DNA (954bp) protein (318aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_68_E02.;"
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKR7_NITGG
PLM3_30_b1_sep16_scaffold_451_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8155..8730)
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICM9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59126.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_451_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8992..10041
DNA (1050bp) protein (350aa)
Uncharacterized protein family UPF0104 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGY9_NITGG
hypothetical protein
Uncharacterized protein family UPF0104 {ECO:0000313|EMBL:AFU59125.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_451_12
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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10090..10884
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A535_NITMS
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX11944.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3_30_b1_sep16_scaffold_451_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10896..11315)
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INC3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59124.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_451_14
Thermoplasmatales archaeon SCGC AB-539-N05, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(11897..12799)
DNA (903bp) protein (301aa)
gap; glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.-)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003388}; EC=1.2.1.59 {ECO:0000256|RuleBase:RU003388};; species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-N05.;"
Glyceraldehyde-3-phosphate dehydrogenase Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TX00_9EURY
PLM3_30_b1_sep16_scaffold_451_15
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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13080..14180
DNA (1101bp) protein (367aa)
Putative signal transduction protein with CBS domains Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUW8_9ARCH
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:EGP94672.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
signal-transduction protein
PLM3_30_b1_sep16_scaffold_451_16
unknown

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14455..14607
DNA (153bp) protein (51aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_451_17
unknown

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comp(14766..15827)
DNA (1062bp) protein (354aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_451_18

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15994..18333
DNA (2340bp) protein (780aa)
Solute binding protein-like protein Tax=uncultured archaeon RepID=I3RKK7_9ARCH
Solute binding protein-like protein {ECO:0000313|EMBL:AFK24867.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
peptide/opine/nickel ABC uptake transporter, substrate-binding protein
PLM3_30_b1_sep16_scaffold_451_19
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18493..19071
DNA (579bp) protein (193aa)
Peptide/opine/nickel ABC uptake transporter, permease protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE21_NITGG
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:AIF82850.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Displaying 19 items

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