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PLM3_30_b1_sep16_scaffold_538

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_538_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(422..988)
DNA (567bp) protein (189aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFW4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57703.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_538_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1026..1346)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMA7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57704.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_538_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1463..2821)
DNA (1359bp) protein (453aa)
UbiD family decarboxylase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDI0_NITGG
UbiD family decarboxylase
UbiD family decarboxylase {ECO:0000313|EMBL:AFU57705.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_538_4
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2824..3183)
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I8X5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15540.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_538_5
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3365..3985)
DNA (621bp) protein (207aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG74_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16081.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_538_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4065..4397)
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16082.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_538_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4476..4811)
DNA (336bp) protein (112aa)
Nascent polypeptide-associated complex protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG6_NITGG
Nascent polypeptide associated complex NAC
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_538_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4808..5296)
DNA (489bp) protein (163aa)
Putative PUA domain profile Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP29_NITGG
PUA domain profile
Putative PUA domain profile {ECO:0000313|EMBL:AFU60404.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_538_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5520..5927
DNA (408bp) protein (136aa)
Putative MBF1 (Multiprotein Bridging factor) Tax=Candidatus Nitrososphaera gargensis RepID=K0IG80_NITGG
MBF1 (multiprotein Bridging factor)
Putative MBF1 (Multiprotein Bridging factor) {ECO:0000313|EMBL:AFU60406.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_538_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5920..7014
DNA (1095bp) protein (365aa)
GTPase HflX Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM2_NITGG
GTP-binding protein
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_538_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7014..7559
DNA (546bp) protein (182aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_00077}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
tRNA (cytidine(56)-2'-O)-methyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG8_NITGG
tRNA ribose 2'-O-methyltransferase
PLM3_30_b1_sep16_scaffold_538_trna_1
unknown

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7618..7741
DNA (124bp)
transferRNA His
PLM3_30_b1_sep16_scaffold_538_12
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8234..9595)
DNA (1362bp) protein (454aa)
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS {ECO:0000256|HAMAP-Rule:MF_01892}; Short=tRNA(Ile2)-agm2C synthetase {ECO:0000256|HAMAP-Rule:MF_01892};; EC=6.3.4.22 {ECO:0000256|HAMAP-Rule:MF_01892};; tRNA(Ile2) agmatidine synthetase {ECO:0000256|HAMAP-Rule:MF_01892}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP49_NITGG
putative DNA-binding protein containing a Zn-ribbon domain
PLM3_30_b1_sep16_scaffold_538_13
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9717..10688
DNA (972bp) protein (324aa)
Conserved uncharacterized protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FL84_STIAD
F5/8 type C domain protein {ECO:0000313|EMBL:KFE67957.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_538_14
unknown

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comp(10711..10872)
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_538_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11211..11675
DNA (465bp) protein (155aa)
Putative cyclase/dehydrase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL22_NITGG
cyclase/dehydrase
Putative cyclase/dehydrase {ECO:0000313|EMBL:AFU59272.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_538_16
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11689..13167)
DNA (1479bp) protein (493aa)
permease Tax=Candidatus Nitrosoarchaeum limnia RepID=UPI00026CDFA2
arabinose efflux permease family protein
Arabinose efflux permease family protein {ECO:0000313|EMBL:AIF83025.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_538_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13397..14584
DNA (1188bp) protein (396aa)
DUF650 and DUF651 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKD8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83699.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_538_18
unknown

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comp(14732..15100)
DNA (369bp) protein (123aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_538_19
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15327..16013
DNA (687bp) protein (229aa)
hypothetical protein Tax=Enterovibrio calviensis RepID=UPI0002ED4D94
Uncharacterized protein {ECO:0000313|EMBL:KEO61303.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
Ca2+-binding protein, RTX toxin
PLM3_30_b1_sep16_scaffold_538_20
unknown

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comp(16147..16977)
DNA (831bp) protein (277aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_538_21
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17033..17686
DNA (654bp) protein (218aa)
Putative NADPH-dependent FMN reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJE9_NITGG
putative NADPH-dependent FMN reductase
Putative NADPH-dependent FMN reductase {ECO:0000313|EMBL:AIC16494.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_538_22
unknown

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17859..18176
DNA (318bp) protein (106aa)

This feature has no annotations

Displaying 23 items

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