ggKbase home page

PLM3-1_50_b1_sep16_scaffold_1412

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_1412_1
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1..195
DNA (195bp) protein (65aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL37_NITGG
NADH:ubiquinone oxidoreductase chain I-like protein
NADH:ubiquinone oxidoreductase chain I-like protein {ECO:0000313|EMBL:AIF85339.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1412_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(382..990)
DNA (609bp) protein (203aa)
leuD1; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000313|EMBL:AFU58412.1}; EC=4.2.1.33 {ECO:0000313|EMBL:AFU58412.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
3-isopropylmalate dehydratase small subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJG6_NITGG
PLM3-1_50_b1_sep16_scaffold_1412_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(1004..2440)
DNA (1437bp) protein (479aa)
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33 4.2.1.35)
3-isopropylmalate dehydratase, large subunit {ECO:0000313|EMBL:AIF84379.1}; EC=4.2.1.33 {ECO:0000313|EMBL:AIF84379.1};; EC=4.2.1.35 {ECO:0000313|EMBL:AIF84379.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
3-isopropylmalate dehydratase large subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAQ0_NITGG
PLM3-1_50_b1_sep16_scaffold_1412_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

2562..3230
DNA (669bp) protein (223aa)
psmB1; proteasome subunit beta (EC:3.4.25.1)
Proteasome subunit beta {ECO:0000256|HAMAP-Rule:MF_02113}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_02113};; 20S proteasome beta subunit {ECO:0000256|HAMAP-Rule:MF_02113}; Proteasome core protein PsmB {ECO:0000256|HAMAP-Rule:MF_02113}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Proteasome subunit beta Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHL9_NITGG
PLM3-1_50_b1_sep16_scaffold_1412_5
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3507..4208)
DNA (702bp) protein (234aa)
ERCC4-type nuclease Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHB0_NITGG
ERCC4-type nuclease
Tax=RBG_13_Bathyarchaeota_38_9_curated
PLM3-1_50_b1_sep16_scaffold_1412_trna_2
unknown

Not on your lists

comp(4276..4348)
DNA (73bp)
transferRNA Thr
PLM3-1_50_b1_sep16_scaffold_1412_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

4482..5822
DNA (1341bp) protein (447aa)
alpha-D-phosphohexomutase (EC:5.4.2.-)
Alpha-D-phosphohexomutase {ECO:0000313|EMBL:AFU57406.1}; EC=5.4.2.- {ECO:0000313|EMBL:AFU57406.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Alpha-D-phosphohexomutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I807_NITGG
PLM3-1_50_b1_sep16_scaffold_1412_7

Not on your lists

5806..6819
DNA (1014bp) protein (338aa)
Thiamine-monophosphate kinase (ThiL) {ECO:0000313|EMBL:AIF04814.1}; EC=2.7.4.16 {ECO:0000313|EMBL:AIF04814.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_176_H06.;"
thiL; thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICP3_NITGG
PLM3-1_50_b1_sep16_scaffold_1412_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(6859..7266)
DNA (408bp) protein (136aa)
30S ribosomal protein S11 Tax=Candidatus Nitrososphaera gargensis RepID=K0ILW6_NITGG
rps11p; 30S ribosomal protein S11p
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1412_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

7554..8609
DNA (1056bp) protein (352aa)
Putative rhomboid family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILW5_NITGG
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:AIF83265.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1412_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(8648..9091)
DNA (444bp) protein (148aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJK8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59383.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1412_trna_1
unknown

Not on your lists

9237..9320
DNA (84bp)
transferRNA Ser
PLM3-1_50_b1_sep16_scaffold_1412_11
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

9693..9929
DNA (237bp) protein (79aa)
Putative stress response protein YsnF Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHC9_NITGG
conserved domain protein, TIGR02271+C111
Conserved domain protein, TIGR02271+C111 {ECO:0000313|EMBL:AIF82751.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1412_12

Not on your lists

comp(10016..10168)
DNA (153bp) protein (51aa)
hypothetical protein
coiled-coil bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60732.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
PLM3-1_50_b1_sep16_scaffold_1412_13

Not on your lists

10339..10560
DNA (222bp) protein (74aa)
transcriptional regulator PadR family transcriptional regulator
transcriptional regulator PadR family transcriptional regulator bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Transcriptional regulator PadR family transcriptional regulator {ECO:0000313|EMBL:AJF60733.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
PLM3-1_50_b1_sep16_scaffold_1412_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

10697..10996
DNA (300bp) protein (100aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF85160.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1412_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11081..11353)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP06_NITGG
protein of unknown function (DUF385)
Uncharacterized protein {ECO:0000313|EMBL:AIF82666.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Displaying 17 items

View Taxonomy