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PLM3-1_50_b1_sep16_scaffold_2759

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_2759_1
unknown

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comp(201..440)
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2759_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(801..2090)
DNA (1290bp) protein (430aa)
Metallophosphoesterase Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXV9_METFV
metallophosphoesterase
Tax=RBG_13_Bathyarchaeota_38_9_curated
PLM3-1_50_b1_sep16_scaffold_2759_3

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comp(2212..3618)
DNA (1407bp) protein (469aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
thrA; aspartate kinase (EC:2.7.2.4)
Aspartokinase Tax=uncultured archaeon RepID=I3RKW3_9ARCH
PLM3-1_50_b1_sep16_scaffold_2759_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3732..3986
DNA (255bp) protein (85aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH08_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59140.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2759_5
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(4073..4996)
DNA (924bp) protein (308aa)
Cell wall surface anchor family protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUT9_OPITP
cell wall surface anchor family protein
Cell wall surface anchor family protein {ECO:0000313|EMBL:ACB74973.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM3-1_50_b1_sep16_scaffold_2759_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5158..5829)
DNA (672bp) protein (224aa)
uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000313|EMBL:AFU56960.1}; EC=3.2.2.- {ECO:0000313|EMBL:AFU56960.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Uracil-DNA glycosylase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBL9_NITGG
PLM3-1_50_b1_sep16_scaffold_2759_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5889..6047)
DNA (159bp) protein (53aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16811.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_50_b1_sep16_scaffold_2759_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6098..6607)
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILE1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59452.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2759_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6660..6956
DNA (297bp) protein (99aa)
DNA-directed RNA polymerase, subunit L (EC:2.7.7.6)
DNA-directed RNA polymerase, subunit L {ECO:0000313|EMBL:AIF83022.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AIF83022.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Uncharacterized protein Tax=uncultured archaeon RepID=I3RKW0_9ARCH
PLM3-1_50_b1_sep16_scaffold_2759_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6983..7270
DNA (288bp) protein (96aa)
Putative DNA-directed RNA polymerase subunit M Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHM2_NITGG
rpoM; DNA-directed RNA polymerase subunit M
Putative DNA-directed RNA polymerase subunit M {ECO:0000313|EMBL:AFU59450.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2759_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7446..8096
DNA (651bp) protein (217aa)
DNA polymerase sliding clamp Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INI8_NITGG
pcn; DNA polymerase sliding clamp
DNA polymerase sliding clamp {ECO:0000256|HAMAP-Rule:MF_00317, ECO:0000256|RuleBase:RU003673}; Proliferating cell nuclear antigen homolog {ECO:0000256|HAMAP-Rule:MF_00317}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2759_12
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8261..8599)
DNA (339bp) protein (113aa)
Putative rieske (2Fe-2S) domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INF8_NITGG
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase {ECO:0000313|EMBL:AIF82200.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2759_13
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8722..10002
DNA (1281bp) protein (427aa)
asnS; asparagine--tRNA ligase (EC:6.1.1.22)
Asparagine--tRNA ligase {ECO:0000313|EMBL:AIC16872.1}; EC=6.1.1.22 {ECO:0000313|EMBL:AIC16872.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Asparagine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILY2_NITGG
PLM3-1_50_b1_sep16_scaffold_2759_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10131..10361
DNA (231bp) protein (77aa)
Putative transcriptional regulator, AsnC family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIK9_NITGG
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIF83267.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2759_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10704..12077
DNA (1374bp) protein (458aa)
gatD; glutamyl-tRNA(Gln) amidotransferase subunit D (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit D {ECO:0000256|RuleBase:RU004457}; EC=6.3.5.- {ECO:0000256|RuleBase:RU004457};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glutamyl-tRNA(Gln) amidotransferase subunit D Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDH1_NITGG
PLM3-1_50_b1_sep16_scaffold_2759_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12178..12510)
DNA (333bp) protein (111aa)
30S ribosomal protein S25e Tax=Candidatus Nitrososphaera gargensis RepID=K0IKT6_NITGG
rps25e; 30S ribosomal protein S25
30S ribosomal protein S25e {ECO:0000313|EMBL:AFU59157.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2759_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12656..13129
DNA (474bp) protein (158aa)
ATP-dependent DNA ligase I (EC:6.5.1.1)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407, ECO:0000256|RuleBase:RU000617}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407, ECO:0000256|RuleBase:RU000617};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000256|HAMAP-Rule:MF_00407}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
DNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICR2_NITGG
Displaying 17 items

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