ggKbase home page

PLM3-1_50_b1_sep16_scaffold_702

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_702_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

471..1823
DNA (1353bp) protein (451aa)
hemL1; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:AFU58225.1}; EC=5.4.3.8 {ECO:0000313|EMBL:AFU58225.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEP2_NITGG
PLM3-1_50_b1_sep16_scaffold_702_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1963..3342
DNA (1380bp) protein (460aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH81_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58213.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_702_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3445..4404
DNA (960bp) protein (320aa)
Cell division protein FtsZ Tax=Candidatus Nitrososphaera gargensis RepID=K0IMU1_NITGG
ftsZ1; cell division protein FtsZ
FtsZ 1 {ECO:0000313|EMBL:ADK25979.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
PLM3-1_50_b1_sep16_scaffold_702_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(4501..4938)
DNA (438bp) protein (146aa)
Putative ribosomal protein L31e Tax=uncultured archaeon RepID=I3RKF1_9ARCH
ribosomal protein L31E
50S ribosomal protein L31e {ECO:0000256|HAMAP-Rule:MF_00410}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_702_5
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(5491..5871)
DNA (381bp) protein (127aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
PLM3-1_50_b1_sep16_scaffold_702_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(5995..6327)
DNA (333bp) protein (111aa)
TRAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW5_NITGG
TRAM domain-containing protein
TRAM domain-containing protein {ECO:0000313|EMBL:AFU58781.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_702_7
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6352..7185)
DNA (834bp) protein (278aa)
aspartate dehydrogenase (EC:1.4.1.21)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
L-aspartate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG64_NITGG
PLM3-1_50_b1_sep16_scaffold_702_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(7280..7462)
DNA (183bp) protein (61aa)
30S ribosomal protein S30e Tax=Candidatus Nitrososphaera gargensis RepID=K0IN54_NITGG
rps30e; 30S ribosomal protein S30e
R-protein S30e {ECO:0000313|EMBL:ADK25956.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
PLM3-1_50_b1_sep16_scaffold_702_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

7632..8582
DNA (951bp) protein (317aa)
quinolinate synthetase (EC:2.5.1.72)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Quinolinate synthase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIF0_NITGG
PLM3-1_50_b1_sep16_scaffold_702_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(8666..9550)
DNA (885bp) protein (295aa)
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Nicotinate-nucleotide pyrophosphorylase [carboxylating] Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA8_NITGG
PLM3-1_50_b1_sep16_scaffold_702_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(9547..9735)
DNA (189bp) protein (63aa)
rpoE''; DNA-directed RNA polymerase, subunit E`` (EC:2.7.7.6)
Transcription elongation factor Spt4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW1_NITGG
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_702_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(9736..10353)
DNA (618bp) protein (206aa)
rpoE`; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6)
DNA-directed RNA polymerase, subunit E {ECO:0000313|EMBL:AFU58775.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AFU58775.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase, subunit E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG60_NITGG
PLM3-1_50_b1_sep16_scaffold_702_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

10471..11613
DNA (1143bp) protein (381aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58772.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_702_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

11597..12157
DNA (561bp) protein (187aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_50_b1_sep16_scaffold_702_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

12510..13586
DNA (1077bp) protein (359aa)
Cobalamin biosynthesis protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK96_NITGG
cbiG; cobalamin biosynthesis protein
Cobalamin biosynthesis protein {ECO:0000313|EMBL:AFU58737.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_702_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

13589..14350
DNA (762bp) protein (254aa)
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IID0_NITGG
cobalamin (vitamin B12) biosynthesis CbiX protein
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:AFU58733.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_702_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

14343..15035
DNA (693bp) protein (231aa)
Precorrin-8X methylmutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK94_NITGG
putative cobalamin (vitamin B12) biosynthesis CbiX protein (modular protein)
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein (Modular protein) {ECO:0000313|EMBL:AIC14632.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_702_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

15035..15595
DNA (561bp) protein (187aa)
Putative threonyl/alanyl--tRNA ligase, SAD Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEM1_NITGG
threonyl/alanyl--tRNA ligase, SAD
Putative threonyl/alanyl--tRNA ligase, SAD {ECO:0000313|EMBL:AFU57223.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Displaying 18 items

View Taxonomy