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S_p1_S3_coassembly_k141_2177529

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_2177529_1
unknown

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2..67
DNA (66bp) protein (22aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2177529_2
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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comp(505..1527)
DNA (1023bp) protein (341aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7R7_GEOUR
Tax=RBG_13_Caldithrix_44_9_curated
S_p1_S3_coassembly_k141_2177529_3

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comp(1746..2105)
DNA (360bp) protein (120aa)
PIN protein
PIN domain-containing protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
PIN protein {ECO:0000313|EMBL:AJF59966.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_2177529_4
unknown

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comp(2105..2308)
DNA (204bp) protein (68aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2177529_5
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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2391..2876
DNA (486bp) protein (162aa)
rfaE bifunctional protein bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
rfaE bifunctional protein
Tax=RBG_13_Pacearchaeota_36_9_curated
S_p1_S3_coassembly_k141_2177529_6

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2880..3512
DNA (633bp) protein (211aa)
Phosphoribosyltransferase Tax=uncultured bacterium RepID=K1YY50_9BACT
Phosphoribosyltransferase {ECO:0000313|EMBL:EKD42067.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phosphoribosyl transferase domain-containing protein
S_p1_S3_coassembly_k141_2177529_7
unknown

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3762..4193
DNA (432bp) protein (144aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2177529_8
R_RIF_OD1_01_42_19, RIF-OD1-1, Parcubacteria, Bacteria

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comp(4220..4687)
DNA (468bp) protein (156aa)
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
cytochrome c oxidase subunit II (EC:1.9.3.1)
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_01_42_19_curated
S_p1_S3_coassembly_k141_2177529_9
Helicobacter apodemus, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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4786..5262
DNA (477bp) protein (159aa)
bacterioferritin comigratory protein Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B7BB97
peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:KGL19929.1}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter apodemus.;"
S_p1_S3_coassembly_k141_2177529_10
AR4, Woesearchaeaota, DPANN, Archaea

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5296..6102
DNA (807bp) protein (269aa)
Putative uncharacterized protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S_p1_S3_coassembly_k141_2177529_11
unknown

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comp(6118..6699)
DNA (582bp) protein (194aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2177529_12

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6801..7328
DNA (528bp) protein (176aa)
Marine sediment metagenome DNA, contig: S01H1_S17749 {ECO:0000313|EMBL:GAG15714.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PAS/PAC sensor protein
S_p1_S3_coassembly_k141_2177529_13
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

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7334..8737
DNA (1404bp) protein (468aa)
FeS assembly protein SufB {ECO:0000313|EMBL:KKQ17612.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
FeS assembly protein SufB
S_p1_S3_coassembly_k141_2177529_14
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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8747..9913
DNA (1167bp) protein (389aa)
FeS assembly protein SufD Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W873_9EURY
FeS assembly protein SufD
FeS assembly protein SufD {ECO:0000313|EMBL:AGN00384.1}; species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk1.;"
S_p1_S3_coassembly_k141_2177529_15
Pontibacillus yanchengensis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9910..11133
DNA (1224bp) protein (408aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Pontibacillus.;" source="Pontibacillus yanchengensis Y32.;"
Cysteine desulfurase Tax=Geobacillus sp. (strain WCH70) RepID=C5D7I9_GEOSW
SufS subfamily cysteine desulfurase
S_p1_S3_coassembly_k141_2177529_16
Thermobaculum terrenum, Thermobaculum, Bacteria

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11130..11516
DNA (387bp) protein (129aa)
SUF system FeS assembly protein, NifU family Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCT6_THET1
NifU family SUF system FeS assembly protein
SUF system FeS assembly protein, NifU family {ECO:0000313|EMBL:ACZ42601.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
S_p1_S3_coassembly_k141_2177529_17
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

11518..12288
DNA (771bp) protein (257aa)
Fe-S cluster assembly ATP-binding protein SufC Tax=uncultured Chloroflexi bacterium RepID=H5SPH1_9CHLR bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Fe-S cluster assembly ATP-binding protein SufC
Tax=AR20
S_p1_S3_coassembly_k141_2177529_18

Not on your lists

12336..12560
DNA (225bp) protein (75aa)
Marine sediment metagenome DNA, contig: S01H1_S06361 {ECO:0000313|EMBL:GAG13804.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
id=5050163 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
S_p1_S3_coassembly_k141_2177529_19

Not on your lists

12538..12864
DNA (327bp) protein (109aa)
Marine sediment metagenome DNA, contig: S01H1_L09294 {ECO:0000313|EMBL:GAF99280.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
S_p1_S3_coassembly_k141_2177529_20
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

12911..13474
DNA (564bp) protein (188aa)
erpA; iron-sulfur cluster insertion protein erpA bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Iron-sulfur cluster assembly accessory protein
Tax=AR5
S_p1_S3_coassembly_k141_2177529_21
unknown

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13485..13850
DNA (366bp) protein (122aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2177529_22
GWC2_CPR2_39_10, CPR2, Bacteria

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13882..14712
DNA (831bp) protein (277aa)
Endonuclease IV Tax=Thermococcus litoralis DSM 5473 RepID=H3ZL82_THELI bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Endonuclease IV {ECO:0000313|EMBL:KKQ93411.1}; Flags: Fragment;; species="Bacteria; candidate division CPR2.;" source="candidate division CPR2 bacterium GW2011_GWC2_39_10.;"
Endonuclease IV
S_p1_S3_coassembly_k141_2177529_23
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14727..15950)
DNA (1224bp) protein (408aa)
dihydrolipoyllysine-residue acetyltransferase (EC:2.3.1.12)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000380A0BF
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
S_p1_S3_coassembly_k141_2177529_24
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(15947..16954)
DNA (1008bp) protein (336aa)
transketolase (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component subunit beta Tax=uncultured candidate division OP1 bacterium RepID=H5S918_9BACT
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
S_p1_S3_coassembly_k141_2177529_25
halophilic archaeon J07HB67, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(16914..17756)
DNA (843bp) protein (281aa)
biotin/lipoate A/B protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] bin=uncultivated_archaeon_J07ABHX67 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX67
Lipoate-protein ligase A {ECO:0000313|EMBL:ERH13052.1}; species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HB67.;"
S_p1_S3_coassembly_k141_2177529_26

Not on your lists

comp(17734..18813)
DNA (1080bp) protein (360aa)
pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.4 1.2.4.1)
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.4); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:AJF60304.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AJF60304.1};; EC=1.2.4.4 {ECO:0000313|EMBL:AJF60304.1};; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_2177529_27
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

comp(18824..19090)
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NEF6_DESAR
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
S_p1_S3_coassembly_k141_2177529_28

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19211..19951
DNA (741bp) protein (247aa)
Marine sediment metagenome DNA, contig: S03H2_S15364 {ECO:0000313|EMBL:GAH63849.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S_p1_S3_coassembly_k141_2177529_29
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

20111..20617
DNA (507bp) protein (169aa)
Uncharacterized protein Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QSA0_VULDI bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=AR20
S_p1_S3_coassembly_k141_2177529_30
AR13, Pacearchaeaota, DPANN, Archaea

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comp(20620..20829)
DNA (210bp) protein (70aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035C8224
RelE protein
Tax=AR13
Displaying 30 items

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