ggKbase home page

S36_SO-2_scaffold_65176

Search features with annotation key words

Displaying items 1-30 of 179 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_65176_1
R_Deltaproteobacteria_40_11, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..134
DNA (132bp) protein (44aa)
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_40_11_curated
S36_SO-2_scaffold_65176_2
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(131..883)
DNA (753bp) protein (251aa)
Serine/threonine protein kinase (EC:2.7.11.1)
Serine/threonine protein kinase {ECO:0000313|EMBL:CCH85801.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CCH85801.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
Serine/threonine protein kinase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EQY8_MODMB
S36_SO-2_scaffold_65176_3

Not on your lists

comp(1077..2531)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WSB0_MYCKA
Uncharacterized protein {ECO:0000313|EMBL:KKK43107.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S36_SO-2_scaffold_65176_4
unknown

Not on your lists

comp(2874..3002)
DNA (129bp) protein (43aa)

This feature has no annotations

S36_SO-2_scaffold_65176_5
unknown

Not on your lists

3049..3777
DNA (729bp) protein (243aa)

This feature has no annotations

S36_SO-2_scaffold_65176_6
unknown

Not on your lists

4003..4314
DNA (312bp) protein (104aa)

This feature has no annotations

S36_SO-2_scaffold_65176_trna_1
unknown

Not on your lists

4840..5034
DNA (195bp)
transferRNA Asp
S36_SO-2_scaffold_65176_trna_2
unknown

Not on your lists

5036..5290
DNA (255bp)
transferRNA Undet
S36_SO-2_scaffold_65176_7
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

5462..5710
DNA (249bp) protein (83aa)
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY20341.;"
DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HIC4_PYRSN
S36_SO-2_scaffold_65176_8
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

5768..9052
DNA (3285bp) protein (1095aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JE32_THEKO
Tax=RBG_16_Micrarchaeota_36_9_curated
S36_SO-2_scaffold_65176_9
unknown

Not on your lists

comp(9429..9563)
DNA (135bp) protein (45aa)

This feature has no annotations

S36_SO-2_scaffold_65176_10
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

9636..12146
DNA (2511bp) protein (837aa)
rpoA1; DNA-directed RNA polymerase subunit A' (EC:2.7.7.6)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM; 9628 / NBRC 100126).;"
DNA-directed RNA polymerase n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O28391_ARCFU
S36_SO-2_scaffold_65176_11

Not on your lists

12168..14720
DNA (2553bp) protein (851aa)
DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RPOA2_METJA id=5103776 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit A''
DNA-directed RNA polymerase subunit A {ECO:0000313|EMBL:AJF63054.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
S36_SO-2_scaffold_65176_12
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists


14886..15134
DNA (249bp) protein (83aa)
50S ribosomal protein L30e n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KNF2_ARCVS
50S ribosomal protein L30
50S ribosomal protein L30e {ECO:0000256|HAMAP-Rule:MF_00481}; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus veneficus (strain DSM 11195 / SNP6).;"
S36_SO-2_scaffold_65176_13
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

15207..15611
DNA (405bp) protein (135aa)
Transcription elongation factor NusA n=2 Tax=Methanococcus maripaludis RepID=G0H230_METMI
transcription elongation factor NusA
Tax=CG_Aenigma_01
S36_SO-2_scaffold_65176_14
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists


15770..16210
DNA (441bp) protein (147aa)
30S ribosomal protein S12 n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00037FCAC3
30S ribosomal protein S12
Tax=RBG_16_Micrarchaeota_36_9_curated
S36_SO-2_scaffold_65176_15
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists


16229..16999
DNA (771bp) protein (257aa)
30S ribosomal protein S7 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS7_NANEQ id=5103767 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S7
Tax=CG_Aenigma_01
S36_SO-2_scaffold_65176_16

Not on your lists

comp(17188..18522)
DNA (1335bp) protein (445aa)
Prephenate dehydrogenase (TyrA2) {ECO:0000313|EMBL:AIF15972.1}; EC=1.3.1.12 {ECO:0000313|EMBL:AIF15972.1};; TaxID=1456261 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_72_A09.;"
S36_SO-2_scaffold_65176_17
Monosiga brevicollis, Monosiga, Choanoflagellida, Eukaryota

Not on your lists

18792..20000
DNA (1209bp) protein (403aa)
Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VBW6_MONBE
Predicted protein {ECO:0000313|EMBL:EDQ85005.1}; TaxID=81824 species="Eukaryota; Choanoflagellida; Codonosigidae; Monosiga.;" source="Monosiga brevicollis (Choanoflagellate).;"
ftsK; DNA translocase FtsK
S36_SO-2_scaffold_65176_18
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

20203..22383
DNA (2181bp) protein (727aa)
Elongation factor 2 n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6W0B3_9EURY
translation elongation factor aEF-2
Tax=CG_Aenigma_01
S36_SO-2_scaffold_65176_19
unknown

Not on your lists

comp(22386..22931)
DNA (546bp) protein (182aa)

This feature has no annotations

S36_SO-2_scaffold_65176_20

Not on your lists

23018..23185
DNA (168bp) protein (56aa)
fused DNA topoisomerase I/SWI domain-containing protein id=18248454 bin=AR5_curated_draft species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Fused DNA topoisomerase I/SWI protein {ECO:0000313|EMBL:KHO48457.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
fused DNA topoisomerase I/SWI domain-containing protein
S36_SO-2_scaffold_65176_21
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(23230..24420)
DNA (1191bp) protein (397aa)
6-phosphofructokinase n=1 Tax=Streptomyces auratus AGR0001 RepID=J1S1A3_9ACTO
pfkA2; 6-phosphofructokinase
Tax=RBG_13_Pacearchaeota_36_9_curated
S36_SO-2_scaffold_65176_22
unknown

Not on your lists

24492..24650
DNA (159bp) protein (53aa)

This feature has no annotations

S36_SO-2_scaffold_65176_23
unknown

Not on your lists

24746..24865
DNA (120bp) protein (40aa)

This feature has no annotations

S36_SO-2_scaffold_65176_24
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24814..25416)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Microcystis aeruginosa PCC 9701 RepID=I4ITA8_MICAE
Uncharacterized protein {ECO:0000313|EMBL:CCI37532.1}; TaxID=721123 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa PCC 9701.;"
pentapeptide repeat-containing protein
S36_SO-2_scaffold_65176_25
unknown

Not on your lists

25468..26235
DNA (768bp) protein (256aa)

This feature has no annotations

S36_SO-2_scaffold_65176_26
unknown

Not on your lists

comp(26253..26393)
DNA (141bp) protein (47aa)

This feature has no annotations

S36_SO-2_scaffold_65176_27
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(26463..27020)
DNA (558bp) protein (186aa)
Pentapeptide repeat protein n=1 Tax=Fischerella sp. JSC-11 RepID=G6FPT1_9CYAN
Pentapeptide repeat protein {ECO:0000313|EMBL:EHC18881.1}; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
pentapeptide repeat-containing protein
S36_SO-2_scaffold_65176_28
unknown

Not on your lists

27715..27918
DNA (204bp) protein (68aa)

This feature has no annotations

Displaying items 1-30 of 179 in total

View Taxonomy