ggKbase home page

S36_SO-2_scaffold_322200

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_322200_1
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

2..664
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JPW6_9FIRM
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
S36_SO-2_scaffold_322200_2

Not on your lists

649..951
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDN0_ARCPA
Putative CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:CEG11460.1}; TaxID=717931 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
hypothetical protein
S36_SO-2_scaffold_322200_3
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(1003..1314)
DNA (312bp) protein (104aa)
Nucleotidyltransferase n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9UYZ8_PYRAB
hypothetical protein
Tax=RBG_16_Planctomycetes_55_9_curated
S36_SO-2_scaffold_322200_4
Pyrococcus abyssi, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(1287..1670)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9UYZ9_PYRAB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAB50263.1}; TaxID=272844 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus abyssi (strain GE5 / Orsay).;"
S36_SO-2_scaffold_322200_5
RBG_16_Elusimicrobia_66_12_curated, Elusimicrobia, Bacteria

Not on your lists

comp(1772..3025)
DNA (1254bp) protein (418aa)
AAA ATPase n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L422_KORCO
AAA ATPase
Tax=RBG_16_Elusimicrobia_66_12_curated
S36_SO-2_scaffold_322200_6
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(3301..3897)
DNA (597bp) protein (199aa)
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 id=5043965 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S7
Tax=CG_Woesearch_02
S36_SO-2_scaffold_322200_7
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(3921..4358)
DNA (438bp) protein (146aa)
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5043966 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S12
Tax=AR11
S36_SO-2_scaffold_322200_8
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(4398..4811)
DNA (414bp) protein (138aa)
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A id=5043967 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_01
S36_SO-2_scaffold_322200_9
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(4808..5092)
DNA (285bp) protein (95aa)
NEQ179 id=5799591 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30e
Tax=AR11
S36_SO-2_scaffold_322200_10

Not on your lists

comp(5112..7805)
DNA (2694bp) protein (898aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
DNA-directed RNA polymerase subunit A' (EC:2.7.7.48); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5043970 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
S36_SO-2_scaffold_322200_11

Not on your lists

comp(7974..9131)
DNA (1158bp) protein (386aa)
DNA-directed RNA polymerase subunit A {ECO:0000313|EMBL:KHO53420.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
DNA-directed RNA polymerase subunit A'' id=5800703 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit A''
S36_SO-2_scaffold_322200_12

Not on your lists

comp(9324..11126)
DNA (1803bp) protein (601aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=5043971 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
S36_SO-2_scaffold_322200_13
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11212..12699)
DNA (1488bp) protein (496aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] id=5043972 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
Tax=AR11
S36_SO-2_scaffold_322200_14
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12692..12937)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000373033A
DNA-directed RNA polymerase, subunit H
Tax=AR11
S36_SO-2_scaffold_322200_trna_1
unknown

Not on your lists

comp(12976..13082)
DNA (107bp)
transferRNA Undet
S36_SO-2_scaffold_322200_15
unknown

Not on your lists

comp(13601..14362)
DNA (762bp) protein (254aa)

This feature has no annotations

S36_SO-2_scaffold_322200_16
unknown

Not on your lists

comp(14364..14618)
DNA (255bp) protein (85aa)

This feature has no annotations

S36_SO-2_scaffold_322200_17

Not on your lists

14785..16131
DNA (1347bp) protein (449aa)
glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=2823248 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
Serine hydroxymethyltransferase {ECO:0000313|EMBL:KKW24922.1}; TaxID=1620413 species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
S36_SO-2_scaffold_322200_18

Not on your lists

16143..16991
DNA (849bp) protein (283aa)
5, 10-methylenetetrahydrofolate dehydrogenase (NADP+), methenyltetrahydrofolate cyclohydrolase
Bifunctional protein FolD id=2823241 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
Bifunctional protein FolD {ECO:0000313|EMBL:KKW24920.1}; TaxID=1620413 species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
S36_SO-2_scaffold_322200_19
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17028..17951
DNA (924bp) protein (308aa)
Periplasmic binding protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SLS3_9BACT
Corrinoid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHJ39753.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
periplasmic binding protein
S36_SO-2_scaffold_322200_20
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

17977..19329
DNA (1353bp) protein (451aa)
Histone acetyltransferase Elp3 like protein id=5800668 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Histone acetyltransferase Elp3 like protein
Tax=AR11
Displaying 21 items

View Taxonomy