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rifoxya1_full_scaffold_3945

Search features with annotation key words

Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxya1_full_scaffold_3945_1
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(2..460)
DNA (459bp) protein (153aa)
Marine sediment metagenome DNA, contig: S01H4_S10537 Tax=RBG_13_Pacearchaeota_33_26_curated
rifoxya1_full_scaffold_3945_2

Not on your lists

comp(505..2061)
DNA (1557bp) protein (519aa)
SecD/SecF/SecDF export membrane protein {ECO:0000313|EMBL:KHO52336.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
SecD/SecF/SecDF export membrane protein
SecD/SecF/SecDF export membrane protein alias=gwa2_scaffold_32_15 id=5039883 tax=GW2011_AR20 species=Candidatus Parvarchaeum acidiphilum genus=Candidatus Parvarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3945_3

Not on your lists

comp(2101..2730)
DNA (630bp) protein (210aa)
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
Protein-export membrane protein SecF alias=gwa2_scaffold_1256_82 id=5045761 tax=GW2011_AR18 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_desc=gwa2_.30_20c
Protein-export membrane protein SecF
rifoxya1_full_scaffold_3945_4
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

3111..3392
DNA (282bp) protein (94aa)
Tax=RBG_13_Pacearchaeota_33_26_curated
rifoxya1_full_scaffold_3945_5
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(3384..4106)
DNA (723bp) protein (241aa)
DNA-directed RNA polymerase subunit D (EC:2.7.7.6); K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_13_Pacearchaeota_33_26_curated
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003621DCB
DNA-directed RNA polymerase subunit D
rifoxya1_full_scaffold_3945_6
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists


comp(4141..4629)
DNA (489bp) protein (163aa)
40S ribosomal protein S14 n=1 Tax=Guillardia theta RepID=Q98S22_GUITH
30S ribosomal protein S11 Tax=AR13
rps11p; 30S ribosomal protein S11
rifoxya1_full_scaffold_3945_7
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists


comp(4622..5131)
DNA (510bp) protein (170aa)
30S ribosomal protein S4 n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VS30_9EURY
rps4p; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=CG_Pacearch_01
30S ribosomal protein S4
rifoxya1_full_scaffold_3945_8
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


comp(5134..5589)
DNA (456bp) protein (152aa)
rps13p; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_13_Pacearchaeota_33_26_curated
30S ribosomal protein S13
rps13p; 30S ribosomal protein S13P; K02952 small subunit ribosomal protein S13 alias=gwa2_scaffold_1845_7 id=5047068 tax=GW2011_AR20 species=Nanoarchaeum equitans genus=Nanoarchaeum taxon_order=unknown taxon_class=unknown phylum=Nanoarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3945_9
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(5603..6145)
DNA (543bp) protein (181aa)
hypothetical protein; K07572 putative nucleotide binding protein Tax=RBG_16_Pacearchaeota_35_8_curated
DNA-binding protein
DNA-binding protein; K07572 putative nucleotide binding protein alias=gwa2_scaffold_1845_9 id=5047070 tax=GW2011_AR20 species=unknown genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3945_10

Not on your lists

comp(6151..6456)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037E07C5
Uncharacterized protein {ECO:0000313|EMBL:KHO51449.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rifoxya1_full_scaffold_3945_11

Not on your lists


comp(6457..6720)
DNA (264bp) protein (88aa)
50S ribosomal protein L21e n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0LLE8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHO51448.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
50S ribosomal protein L21e
rifoxya1_full_scaffold_3945_12

Not on your lists

comp(6761..6958)
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51447.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rifoxya1_full_scaffold_3945_13

Not on your lists

comp(7029..8237)
DNA (1209bp) protein (403aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49496.1}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
hypothetical protein; K02004 putative ABC transport system permease protein alias=gwa2_scaffold_1391_73 id=5046030 tax=GW2011_AR4 species=Methanococcus maripaludis genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_desc=gwa2_.45_18 rbh
hypothetical protein
rifoxya1_full_scaffold_3945_14
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(8242..9120)
DNA (879bp) protein (293aa)
id=5103794 Tax=RBG_16_Pacearchaeota_35_8_curated
hypothetical protein
seg alias=gwa2_scaffold_111_63 id=5041498 tax=GW2011_AR20 organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3945_15
unknown

Not on your lists

comp(9117..9425)
DNA (309bp) protein (103aa)

This feature has no annotations

rifoxya1_full_scaffold_3945_16
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(9406..10083)
DNA (678bp) protein (226aa)
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein Tax=RBG_13_Pacearchaeota_33_26_curated
ABC transport system protein
ABC transport system protein alias=gwa2_scaffold_111_64 id=5041499 tax=GW2011_AR20 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3945_17
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(10163..10390)
DNA (228bp) protein (76aa)
Tax=AR13
rifoxya1_full_scaffold_3945_18
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(10609..11610)
DNA (1002bp) protein (334aa)
Bifunctional protein RfaE, domain I {ECO:0000313|EMBL:EEO34510.1}; EC=2.7.1.- {ECO:0000313|EMBL:EEO34510.1};; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacte
Bifunctional protein RfaE, domain I n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9H3_FUSMR
rfaE bifunctional protein
rifoxya1_full_scaffold_3945_19
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists


11748..12128
DNA (381bp) protein (127aa)
50S ribosomal protein L18e n=1 Tax=Caldisphaera lagunensis (strain DSM 15908 / JCM 11604 / IC-154) RepID=L0AB02_CALLD
50S ribosomal protein L18e Tax=AR13
ribosomal protein L18E
rifoxya1_full_scaffold_3945_20

Not on your lists


12125..12523
DNA (399bp) protein (133aa)
50S ribosomal protein L13 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T6E8_9EURY
Large subunit ribosomal protein L13 {ECO:0000313|EMBL:KHO55551.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
50S ribosomal protein L13P
rifoxya1_full_scaffold_3945_21
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


12520..12921
DNA (402bp) protein (134aa)
30S ribosomal protein S9 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363BEDB
rps9p; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RBG_13_Pacearchaeota_33_26_curated
30S ribosomal protein S9
rifoxya1_full_scaffold_3945_22

Not on your lists

comp(12918..13319)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000382DD02
Marine sediment metagenome DNA, contig: S06H3_L03780 {ECO:0000313|EMBL:GAI16792.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
putative bacteriophage 370.1 integrase
rifoxya1_full_scaffold_3945_23
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(13332..14123)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000382DD02 rbh
putative bacteriophage 370.1 integrase Tax=CG_Woesearch_02
resolvase, N terminal domain protein
rifoxya1_full_scaffold_3945_24
unknown

Not on your lists

comp(14120..14545)
DNA (426bp) protein (142aa)

This feature has no annotations

rifoxya1_full_scaffold_3945_25
unknown

Not on your lists

comp(14636..14791)
DNA (156bp) protein (52aa)

This feature has no annotations

rifoxya1_full_scaffold_3945_26
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(14788..14922)
DNA (135bp) protein (45aa)
Tax=CG_Pacearch_06
rifoxya1_full_scaffold_3945_27
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

15023..16288
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036B8CA0 rbh
Transposase, IS4 family protein/SWIM domain fusion Tax=CG_Pacearch_06
transposase family protein
rifoxya1_full_scaffold_3945_28
R_OD1_Nomurabacteria_37_25, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

16285..18729
DNA (2445bp) protein (815aa)
AMDV3_7 n=1 Tax=uncultured virus RepID=B3GAM1_9VIRU rbh
N-6 DNA methylase Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_37_25_curated
N-6 DNA methylase
Displaying 28 items

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