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SRVP18_trench_6_60cm_Methanoperedens_41_6

SRVP18_trench_6_60cm_unknown_41_6
In projects: SRVP18_trench_6_60cm  |  MpSRVP  |  Mp  |  diaphorachaeota  |  archaea_ggkbase  |  borg_methanoperedens_collection_2023  |  mp_ece

Consensus taxonomy:

Metagenomic Context

Parent: SRVP18_trench_6_60cm_UNK

Properties

Avg. coverage: 5.84 Longest contig: 13.87 Kbp Bin length: 1.50 Mbp GC content: 41.37 %
Contigs count: 371 Features count: 2060 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 16 / 51 ASCG 31 / 38 MC: 1

Description

MetaBAT_24

Displaying items 1-50 of 371 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SRVP18_trench_6_60cm_scaffold_113661 1 1092 bp 41.30 5.63 97.53
SRVP18_trench_6_60cm_scaffold_41083
Species: RBG_19FT_COMBO_Euryarchaeota_56_21_curated (100%)
1 2091 bp 42.61 4.73 99.86
SRVP18_trench_6_60cm_scaffold_41480
Species: Aciduliprofundum sp. MAR08-339 (100%)
1 2078 bp 41.05 5.27 99.90
SRVP18_trench_6_60cm_scaffold_19208
Species: Candidatus Methanoperedens nitroreducens (100%)
1 3411 bp 42.45 6.02 97.19
SRVP18_trench_6_60cm_scaffold_91938 1 1248 bp 41.03 6.25 99.76
SRVP18_trench_6_60cm_scaffold_77974 1 1386 bp 42.14 5.84 93.29
SRVP18_trench_6_60cm_scaffold_118994 1 1060 bp 42.36 4.95 91.70
SRVP18_trench_6_60cm_scaffold_229735 1 1205 bp 41.16 4.85 37.84
SRVP18_trench_6_60cm_scaffold_20292
Species: Methanosarcina mazei (50%)
2 3293 bp 43.94 5.06 87.91
SRVP18_trench_6_60cm_scaffold_89747 2 1268 bp 42.35 4.85 54.65
SRVP18_trench_6_60cm_scaffold_79224
Species: RBG_13_Euryarchaeota_31_8_curated (100%)
2 1372 bp 42.57 4.37 85.71
SRVP18_trench_6_60cm_scaffold_53759
Species: Methanohalophilus mahii (50%)
2 1758 bp 42.15 4.86 84.64
SRVP18_trench_6_60cm_scaffold_86216
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
2 1300 bp 42.46 5.42 99.46
SRVP18_trench_6_60cm_scaffold_91786
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1250 bp 42.40 5.04 81.84
SRVP18_trench_6_60cm_scaffold_122929 2 1496 bp 42.58 5.41 77.41
SRVP18_trench_6_60cm_scaffold_132075 2 1776 bp 42.34 5.32 76.35
SRVP18_trench_6_60cm_scaffold_19610
Species: CG_Proteo_01 (50%)
2 3365 bp 45.20 4.81 96.73
SRVP18_trench_6_60cm_scaffold_25399 2 2851 bp 39.21 6.10 85.34
SRVP18_trench_6_60cm_scaffold_44788 2 1977 bp 42.59 6.15 95.14
SRVP18_trench_6_60cm_scaffold_23499 2 3000 bp 41.90 10.55 94.50
SRVP18_trench_6_60cm_scaffold_85724 2 1305 bp 42.15 6.32 90.34
SRVP18_trench_6_60cm_scaffold_37941 2 2201 bp 42.53 6.20 93.50
SRVP18_trench_6_60cm_scaffold_76526 2 1403 bp 42.27 4.06 68.00
SRVP18_trench_6_60cm_scaffold_13923
Species: Candidatus Methanoperedens nitroreducens (50%)
2 4188 bp 41.31 6.09 90.04
SRVP18_trench_6_60cm_scaffold_42993 2 2031 bp 42.29 5.83 98.82
SRVP18_trench_6_60cm_scaffold_39765
Species: BJP_08E140C01_10KDA_Methanosarcinales_43_67 (50%)
2 2135 bp 42.20 5.55 78.13
SRVP18_trench_6_60cm_scaffold_29332
Species: RBG_16_Euryarchaeota_62_10_curated (50%)
2 2598 bp 41.07 3.64 93.88
SRVP18_trench_6_60cm_scaffold_64806
Species: Candidatus Omnitrophus sp. SKK-01 (50%)
2 1559 bp 42.46 5.68 99.10
SRVP18_trench_6_60cm_scaffold_19179
Species: Methanococcoides methylutens (50%)
2 3415 bp 38.95 6.76 88.64
SRVP18_trench_6_60cm_scaffold_110552
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1111 bp 42.30 4.32 87.49
SRVP18_trench_6_60cm_scaffold_76076 2 1409 bp 42.51 6.07 99.86
SRVP18_trench_6_60cm_scaffold_66517
Species: RBG_13_Euryarchaeota_31_8_curated (100%)
2 1533 bp 42.20 5.38 94.32
SRVP18_trench_6_60cm_scaffold_23597
Species: Candidatus Methanoperedens nitroreducens (50%)
2 3830 bp 44.49 7.17 94.70
SRVP18_trench_6_60cm_scaffold_28833
Species: Methanosarcina lacustris (50%)
2 2628 bp 38.43 5.59 98.86
SRVP18_trench_6_60cm_scaffold_27075
Species: Methanosarcina barkeri (50%)
2 3578 bp 42.79 5.79 99.94
SRVP18_trench_6_60cm_scaffold_115135 2 1083 bp 42.29 4.71 88.09
SRVP18_trench_6_60cm_scaffold_11378
Species: Methanolobus tindarius (50%)
2 4741 bp 39.87 5.63 95.93
SRVP18_trench_6_60cm_scaffold_27860
Species: Candidatus Methanoperedens nitroreducens (66.67%)
3 2686 bp 37.75 7.71 91.92
SRVP18_trench_6_60cm_scaffold_92246 3 1246 bp 41.17 4.70 76.08
SRVP18_trench_6_60cm_scaffold_17723 3 3591 bp 42.13 5.56 88.97
SRVP18_trench_6_60cm_scaffold_131620 3 1339 bp 41.15 5.60 87.60
SRVP18_trench_6_60cm_scaffold_26968 3 2743 bp 37.19 5.20 67.70
SRVP18_trench_6_60cm_scaffold_50703 3 2250 bp 42.31 6.13 64.40
SRVP18_trench_6_60cm_scaffold_23440 3 3005 bp 40.57 5.64 85.86
SRVP18_trench_6_60cm_scaffold_78290 3 1383 bp 42.66 5.64 95.44
SRVP18_trench_6_60cm_scaffold_25361 3 2855 bp 37.90 5.52 87.22
SRVP18_trench_6_60cm_scaffold_23458 3 4898 bp 45.81 6.00 99.96
SRVP18_trench_6_60cm_scaffold_45543 3 1958 bp 41.37 6.05 83.04
SRVP18_trench_6_60cm_scaffold_67432
Phylum: Euryarchaeota (66.67%)
3 1519 bp 42.26 4.25 84.53
SRVP18_trench_6_60cm_scaffold_26763
Species: Candidatus Methanoperedens nitroreducens (66.67%)
3 2757 bp 37.90 5.01 82.59
Displaying items 1-50 of 371 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.