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SRVP18_trench_6_60cm_Methanoperedens_41_6

SRVP18_trench_6_60cm_unknown_41_6
In projects: SRVP18_trench_6_60cm  |  MpSRVP  |  Mp  |  diaphorachaeota  |  archaea_ggkbase  |  borg_methanoperedens_collection_2023  |  mp_ece

Consensus taxonomy:

Metagenomic Context

Parent: SRVP18_trench_6_60cm_UNK

Properties

Avg. coverage: 5.84 Longest contig: 13.87 Kbp Bin length: 1.50 Mbp GC content: 41.37 %
Contigs count: 371 Features count: 2060 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 16 / 51 ASCG 31 / 38 MC: 1

Description

MetaBAT_24

Displaying items 1-50 of 371 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SRVP18_trench_6_60cm_scaffold_118994 1 1060 bp 42.36 4.95 91.70
SRVP18_trench_6_60cm_scaffold_115135 2 1083 bp 42.29 4.71 88.09
SRVP18_trench_6_60cm_scaffold_113661 1 1092 bp 41.30 5.63 97.53
SRVP18_trench_6_60cm_scaffold_110552
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1111 bp 42.30 4.32 87.49
SRVP18_trench_6_60cm_scaffold_102860 3 1164 bp 41.15 4.25 72.68
SRVP18_trench_6_60cm_scaffold_229735 1 1205 bp 41.16 4.85 37.84
SRVP18_trench_6_60cm_scaffold_94587
Phylum: Euryarchaeota (50%)
4 1227 bp 42.30 4.40 79.95
SRVP18_trench_6_60cm_scaffold_92246 3 1246 bp 41.17 4.70 76.08
SRVP18_trench_6_60cm_scaffold_91938 1 1248 bp 41.03 6.25 99.76
SRVP18_trench_6_60cm_scaffold_91786
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1250 bp 42.40 5.04 81.84
SRVP18_trench_6_60cm_scaffold_89747 2 1268 bp 42.35 4.85 54.65
SRVP18_trench_6_60cm_scaffold_86216
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
2 1300 bp 42.46 5.42 99.46
SRVP18_trench_6_60cm_scaffold_85724 2 1305 bp 42.15 6.32 90.34
SRVP18_trench_6_60cm_scaffold_131620 3 1339 bp 41.15 5.60 87.60
SRVP18_trench_6_60cm_scaffold_79224
Species: RBG_13_Euryarchaeota_31_8_curated (100%)
2 1372 bp 42.57 4.37 85.71
SRVP18_trench_6_60cm_scaffold_78290 3 1383 bp 42.66 5.64 95.44
SRVP18_trench_6_60cm_scaffold_77974 1 1386 bp 42.14 5.84 93.29
SRVP18_trench_6_60cm_scaffold_76526 2 1403 bp 42.27 4.06 68.00
SRVP18_trench_6_60cm_scaffold_76575 3 1403 bp 42.48 5.99 80.83
SRVP18_trench_6_60cm_scaffold_76076 2 1409 bp 42.51 6.07 99.86
SRVP18_trench_6_60cm_scaffold_71806 3 1461 bp 41.07 6.06 93.02
SRVP18_trench_6_60cm_scaffold_122929 2 1496 bp 42.58 5.41 77.41
SRVP18_trench_6_60cm_scaffold_67432
Phylum: Euryarchaeota (66.67%)
3 1519 bp 42.26 4.25 84.53
SRVP18_trench_6_60cm_scaffold_66517
Species: RBG_13_Euryarchaeota_31_8_curated (100%)
2 1533 bp 42.20 5.38 94.32
SRVP18_trench_6_60cm_scaffold_64806
Species: Candidatus Omnitrophus sp. SKK-01 (50%)
2 1559 bp 42.46 5.68 99.10
SRVP18_trench_6_60cm_scaffold_141970
Phylum: Euryarchaeota (50%)
4 1571 bp 42.33 4.96 70.66
SRVP18_trench_6_60cm_scaffold_58486 3 1664 bp 42.43 4.24 67.25
SRVP18_trench_6_60cm_scaffold_58468 3 1665 bp 41.14 4.86 93.15
SRVP18_trench_6_60cm_scaffold_53759
Species: Methanohalophilus mahii (50%)
2 1758 bp 42.15 4.86 84.64
SRVP18_trench_6_60cm_scaffold_53498
Domain: Archaea (50%)
4 1764 bp 42.23 5.53 94.05
SRVP18_trench_6_60cm_scaffold_132075 2 1776 bp 42.34 5.32 76.35
SRVP18_trench_6_60cm_scaffold_50223 5 1836 bp 42.65 5.47 54.58
SRVP18_trench_6_60cm_scaffold_48953 4 1866 bp 41.32 4.66 98.23
SRVP18_trench_6_60cm_scaffold_45543 3 1958 bp 41.37 6.05 83.04
SRVP18_trench_6_60cm_scaffold_44788 2 1977 bp 42.59 6.15 95.14
SRVP18_trench_6_60cm_scaffold_43217
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
4 2024 bp 41.21 6.30 69.81
SRVP18_trench_6_60cm_scaffold_105742 4 2028 bp 42.26 5.03 81.36
SRVP18_trench_6_60cm_scaffold_42993 2 2031 bp 42.29 5.83 98.82
SRVP18_trench_6_60cm_scaffold_42994
Phylum: Euryarchaeota (50%)
4 2031 bp 41.31 4.28 67.80
SRVP18_trench_6_60cm_scaffold_42479 4 2046 bp 42.18 5.72 92.96
SRVP18_trench_6_60cm_scaffold_42380 5 2049 bp 42.36 6.15 85.94
SRVP18_trench_6_60cm_scaffold_41480
Species: Aciduliprofundum sp. MAR08-339 (100%)
1 2078 bp 41.05 5.27 99.90
SRVP18_trench_6_60cm_scaffold_41083
Species: RBG_19FT_COMBO_Euryarchaeota_56_21_curated (100%)
1 2091 bp 42.61 4.73 99.86
SRVP18_trench_6_60cm_scaffold_40224
Phylum: Euryarchaeota (66.67%)
3 2119 bp 42.28 4.18 95.00
SRVP18_trench_6_60cm_scaffold_39765
Species: BJP_08E140C01_10KDA_Methanosarcinales_43_67 (50%)
2 2135 bp 42.20 5.55 78.13
SRVP18_trench_6_60cm_scaffold_39566 3 2142 bp 41.04 6.30 69.05
SRVP18_trench_6_60cm_scaffold_39542 3 2143 bp 42.65 5.04 91.41
SRVP18_trench_6_60cm_scaffold_39506
Phylum: Euryarchaeota (66.67%)
3 2144 bp 42.26 4.97 57.51
SRVP18_trench_6_60cm_scaffold_38379 3 2185 bp 42.33 3.98 88.83
SRVP18_trench_6_60cm_scaffold_37941 2 2201 bp 42.53 6.20 93.50
Displaying items 1-50 of 371 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.