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SR-VP_26_10_2019_2_100cm_scaffold_4321

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_4321_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3..377)
DNA (375bp) protein (125aa)
Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000313|EMBL:KCZ71180.1}; EC=6.3.5.3 {ECO:0000313|EMBL:KCZ71180.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Phosphoribosylformylglycinamidine synthase I n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZJ8_METPS
purQ; phosphoribosylformylglycinamidine synthase I
SR-VP_26_10_2019_2_100cm_scaffold_4321_trna_1
unknown

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comp(469..541)
DNA (73bp)
transferRNA His
SR-VP_26_10_2019_2_100cm_scaffold_4321_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(644..1810)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PRY9_METMA
Geranylgeranyl reductase family protein {ECO:0000313|EMBL:KCZ70681.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_4321_3
unknown

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comp(1807..1956)
DNA (150bp) protein (50aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_4321_4
CG_Nitrosp_01, Nitrospirae, Bacteria

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comp(1949..2314)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YVJ3_9THEM
hypothetical protein
Tax=CG_Nitrosp_01
SR-VP_26_10_2019_2_100cm_scaffold_4321_5
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(2311..2604)
DNA (294bp) protein (98aa)
DNA polymerase, beta domain protein region n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UZ61_ROSS1
DNA polymerase subunit beta
Tax=CG_Nitrosp_01
SR-VP_26_10_2019_2_100cm_scaffold_4321_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2678..3325)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46E93_METBF
Uncharacterized protein {ECO:0000313|EMBL:KCZ72238.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_4321_7
unknown

Not on your lists

comp(3322..4560)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46E94_METBF
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_4321_8
unknown

Not on your lists

4689..5666
DNA (978bp) protein (326aa)
Cell division protein FtsZ n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IKP2_NITGG
ftsZ2; cell division protein FtsZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_4321_9
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5694..7097)
DNA (1404bp) protein (468aa)
Radical SAM domain protein n=7 Tax=Clostridium thermocellum RepID=A3DF12_CLOTH
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:ABN52541.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SR-VP_26_10_2019_2_100cm_scaffold_4321_10
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7187..8806)
DNA (1620bp) protein (540aa)
Radical SAM domain protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPR6_METS4
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ACA14680.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SR-VP_26_10_2019_2_100cm_scaffold_4321_11
unknown

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comp(8918..9154)
DNA (237bp) protein (79aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_4321_12
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9230..11011)
DNA (1782bp) protein (594aa)
Radical SAM domain protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPR6_METS4
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ACA14680.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SR-VP_26_10_2019_2_100cm_scaffold_4321_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11111..12073
DNA (963bp) protein (321aa)
Formylmethanofuran dehydrogenase subunit C {ECO:0000313|EMBL:KCZ72240.1}; EC=1.2.99.5 {ECO:0000313|EMBL:KCZ72240.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B1A0 related cluster n=1 Tax=unknown RepID=UPI0003D1B1A0
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_4321_14
unknown

Not on your lists

12207..12965
DNA (759bp) protein (253aa)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KV17_METHD
putative phospho-2-dehydro-3-deoxyheptonate aldolase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_4321_15
unknown

Not on your lists

12962..14095
DNA (1134bp) protein (378aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=2 Tax=Methanococcoides burtonii RepID=DHQS_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_4321_16
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14197..15465
DNA (1269bp) protein (423aa)
Signal recognition particle GTPase n=2 Tax=Methanosaeta harundinacea RepID=G7WJZ5_METH6
Signal recognition particle GTPase
Signal recognition particle GTPase {ECO:0000313|EMBL:AET63436.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
SR-VP_26_10_2019_2_100cm_scaffold_4321_17
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15432..16781
DNA (1350bp) protein (450aa)
Uncharacterized protein n=2 Tax=Methanosaeta harundinacea RepID=G7WJZ4_METH6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET63435.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
SR-VP_26_10_2019_2_100cm_scaffold_4321_18
unknown

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16789..16938
DNA (150bp) protein (50aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_4321_19
unknown

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17008..18279
DNA (1272bp) protein (424aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PYM5_METMA
Phytoene dehydrogenase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_4321_20
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18299..18736
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B4D34D
Uncharacterized protein {ECO:0000313|EMBL:CDI03458.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
SR-VP_26_10_2019_2_100cm_scaffold_4321_21
RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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18741..19217
DNA (477bp) protein (159aa)
Putative transmembrane protein id=4781976 bin=GWC2_Deltaproteobacteria_42_51 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
putative transmembrane protein
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
SR-VP_26_10_2019_2_100cm_scaffold_4321_22
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19212..19565)
DNA (354bp) protein (118aa)
Amino acid transporter n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I4W1_METCZ
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AFD01055.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 /; HZ254).;"
SR-VP_26_10_2019_2_100cm_scaffold_4321_23
unknown

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comp(19565..20080)
DNA (516bp) protein (172aa)

This feature has no annotations

Displaying 24 items

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