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SR-VP_26_10_2019_2_100cm_scaffold_1275

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_1275_1
unknown

Not on your lists

288..794
DNA (507bp) protein (169aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1275_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1709..2047
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71160.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_1275_3
unknown

Not on your lists

comp(2076..2798)
DNA (723bp) protein (241aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2919..4160
DNA (1242bp) protein (414aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PUU4_METMA
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1275_5
unknown

Not on your lists

4377..6008
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKM5_METZD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_6
unknown

Not on your lists

6005..7276
DNA (1272bp) protein (424aa)
Phosphomethylpyrimidine synthase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKN0_METZD
thiamine biosynthesis protein ThiC
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7239..8228)
DNA (990bp) protein (330aa)
GTP-binding protein, gtp1/obg family n=2 Tax=Methanosarcina mazei RepID=M1PB24_METMZ
Putative GTPase {ECO:0000313|EMBL:KCZ71517.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
GTP-binding protein, gtp1/obg family
SR-VP_26_10_2019_2_100cm_scaffold_1275_8
unknown

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8275..8367
DNA (93bp) protein (31aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1275_9
GWE1_Berkelbacteria_39_12, Berkelbacteria, Bacteria

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8371..8829
DNA (459bp) protein (153aa)
putative ribonuclease III (EC:3.1.26.3) id=15189588 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
RNAse III (EC:3.1.26.3)
Tax=GWE1_Berkelbacteria_39_12
SR-VP_26_10_2019_2_100cm_scaffold_1275_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8886..9239)
DNA (354bp) protein (118aa)
Smr domain-containing protein {ECO:0000313|EMBL:KCZ72242.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_1275_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9340..10779
DNA (1440bp) protein (480aa)
Fe-S protein, radical SAM family n=1 Tax=uncultured prokaryote RepID=H5SKQ8_9ZZZZ
radical SAM protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1275_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10787..11053)
DNA (267bp) protein (89aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1275_13
unknown

Not on your lists

11228..12172
DNA (945bp) protein (315aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
dTDP-glucose 4,6-dehydratase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DF2_METBF
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12174..13229
DNA (1056bp) protein (352aa)
NMD3 family protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E7Z4_METEZ
NMD protein affecting ribosome stability and mRNA decay {ECO:0000313|EMBL:KCZ73369.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NMD3 family protein
SR-VP_26_10_2019_2_100cm_scaffold_1275_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13219..14256)
DNA (1038bp) protein (346aa)
SAM-dependent methyltransferase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12TC9_METBU
RNA cap guanine-N2 methyltransferase {ECO:0000313|EMBL:KCZ72512.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
methyltransferase
SR-VP_26_10_2019_2_100cm_scaffold_1275_16
unknown

Not on your lists

14349..15089
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W3X4_UNCMA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_17
unknown

Not on your lists

comp(15195..16067)
DNA (873bp) protein (291aa)
Cation diffusion facilitator family transporter n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SH46_NOCSJ
cation diffusion facilitator family transporter
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16088..16408)
DNA (321bp) protein (107aa)
Putative extracellular polysaccharide biosynthesis enzyme {ECO:0000313|EMBL:KCZ73442.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Antibiotic biosynthesis monooxygenase id=3273426 bin=GWF2_Ignavibacteria_35_20 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
antibiotic biosynthesis monooxygenase
SR-VP_26_10_2019_2_100cm_scaffold_1275_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16426..17301)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3Q7_SPHTD
ClpP class periplasmic serine protease {ECO:0000313|EMBL:KCZ73438.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_1275_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17483..19240)
DNA (1758bp) protein (586aa)
UvrABC system protein C n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D482_METSW
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UvrABC system protein C
SR-VP_26_10_2019_2_100cm_scaffold_1275_21
unknown

Not on your lists

19517..19828
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAF5_9ARCH
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_22
unknown

Not on your lists

19821..20336
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAF8_9ARCH
response regulator receiver
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20333..22162
DNA (1830bp) protein (610aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY37_9BACT
Signal transduction histidine kinase {ECO:0000313|EMBL:KCZ72818.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
integral membrane sensor signal transduction histidine kinase
SR-VP_26_10_2019_2_100cm_scaffold_1275_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22159..23202
DNA (1044bp) protein (348aa)
Nitrate ABC transporter, ATP-binding protein, putative n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29615_ARCFU
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:KCZ72819.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
SR-VP_26_10_2019_2_100cm_scaffold_1275_25
unknown

Not on your lists

comp(23212..26028)
DNA (2817bp) protein (939aa)
UvrABC system protein A n=1 Tax=Thermincola potens (strain JR) RepID=D5XCB4_THEPJ
excinuclease ABC subunit A
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_26
unknown

Not on your lists

26326..27201
DNA (876bp) protein (292aa)
Putative signal transduction protein with CBS domains n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EB97_METEZ
putative signal transduction protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_27
unknown

Not on your lists

comp(27229..28044)
DNA (816bp) protein (272aa)
guaB-2; putative inosine-5\'-monophosphate dehydrogenase (EC:1.1.1.205)
Putative inosine-5\'-monophosphate dehydrogenase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W1M4_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_28
unknown

Not on your lists

28131..28646
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000369DF41
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1275_29
unknown

Not on your lists

28653..29345
DNA (693bp) protein (231aa)
endonuclease IV (EC:3.1.21.2)
Putative endonuclease IV n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PZN2_METMA
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 29 items

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