ggKbase home page

SR-VP_26_10_2019_C_40cm_scaffold_2177

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_2177_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2..607
DNA (606bp) protein (202aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:KCZ72118.1}; EC=6.3.5.4 {ECO:0000313|EMBL:KCZ72118.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Asparagine synthetase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AB0_METBF
SR-VP_26_10_2019_C_40cm_scaffold_2177_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

822..1178
DNA (357bp) protein (119aa)
Transposase IS200-family protein n=2 Tax=Thermus RepID=H7GG71_9DEIN
Transposase {ECO:0000313|EMBL:KCZ70366.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transposase
SR-VP_26_10_2019_C_40cm_scaffold_2177_3
unknown

Not on your lists

1225..1632
DNA (408bp) protein (136aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_2177_4
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1655..2464)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AD7_METBF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ71155.1}; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri (strain Fusaro / DSM 804).;"
SR-VP_26_10_2019_C_40cm_scaffold_2177_5
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(2629..3240)
DNA (612bp) protein (204aa)
Abortive infection protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PWX4_STANL
hypothetical protein
Tax=BJP_IG2102_Coriobacteriales_64_17
SR-VP_26_10_2019_C_40cm_scaffold_2177_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3492..3698)
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73088.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_2177_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3729..4187)
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9X1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KCZ73087.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_2177_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4829..5077
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W0B0_UNCMA
Hydrogenase maturation factor {ECO:0000313|EMBL:KCZ72370.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hydrogenase maturation factor
SR-VP_26_10_2019_C_40cm_scaffold_2177_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5180..5518)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JD94_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KCZ73629.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_2177_10
unknown

Not on your lists

5569..6825
DNA (1257bp) protein (419aa)
Adenosylhomocysteinase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YY94_METPS
ahcY; adenosylhomocysteinase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_2177_11
unknown

Not on your lists

6827..7912
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4C0U0_METCG
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_2177_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7920..8471
DNA (552bp) protein (184aa)
Adenylylsulfate kinase-like kinase {ECO:0000313|EMBL:KCZ70883.1}; EC=2.7.1.25 {ECO:0000313|EMBL:KCZ70883.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Adenylylsulfate kinase n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B803_METTP
adenylylsulfate kinase
SR-VP_26_10_2019_C_40cm_scaffold_2177_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8461..9258
DNA (798bp) protein (266aa)
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein {ECO:0000313|EMBL:KCZ70882.1}; EC=3.1.3.25 {ECO:0000313|EMBL:KCZ70882.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
fbp; D-fructose 1,6-bisphosphatase (EC:3.1.3.25)
Putative inositol-1-monophosphatase n=1 Tax=uncultured archaeon RepID=D1JIM6_9ARCH
SR-VP_26_10_2019_C_40cm_scaffold_2177_14
unknown

Not on your lists

9530..9955
DNA (426bp) protein (142aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_2177_15
unknown

Not on your lists

comp(10346..10945)
DNA (600bp) protein (200aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_2177_16
Glaciecola pallidula, Glaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11007..11732)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Glaciecola pallidula DSM 14239 = ACAM 615 RepID=K6ZC10_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAC27872.1}; TaxID=1121922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Glaciecola.;" source="Glaciecola pallidula DSM 14239 = ACAM 615.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_2177_17
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12346..15765
DNA (3420bp) protein (1140aa)
DNA polymerase II large subunit (EC:2.7.7.7)
DNA polymerase II large subunit {ECO:0000255|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000255|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000255|HAMAP-Rule:MF_00324};; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
DNA polymerase II large subunit n=2 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=DP2L_METBU
SR-VP_26_10_2019_C_40cm_scaffold_2177_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(15758..16531)
DNA (774bp) protein (258aa)
Probable ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
dimethyladenosine transferase (EC:2.1.1.48)
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN14_METZD
SR-VP_26_10_2019_C_40cm_scaffold_2177_19
unknown

Not on your lists

comp(16561..17151)
DNA (591bp) protein (197aa)
Putative RNA-binding protein n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KYB4_METHD
putative RNA-binding protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_2177_20
unknown

Not on your lists

comp(17231..17584)
DNA (354bp) protein (118aa)
RNA polymerase Rpb4 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN16_METZD
RNA polymerase Rpb4
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_2177_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(17596..17886)
DNA (291bp) protein (97aa)
50S ribosomal protein L21e n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=RL21_METBF
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LSU ribosomal protein L21E
SR-VP_26_10_2019_C_40cm_scaffold_2177_22
unknown

Not on your lists

comp(17923..19170)
DNA (1248bp) protein (416aa)
tRNA pseudouridine synthase Pus10 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN18_METZD
THUMP domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_2177_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19273..20112)
DNA (840bp) protein (280aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72814.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_2177_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(20403..21065)
DNA (663bp) protein (221aa)
tRNA (pseudouridine(54)-N(1))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00587}; EC=2.1.1.257 {ECO:0000256|HAMAP-Rule:MF_00587};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tRNA (pseudouridine(54)-N(1))-methyltransferase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=TRMY_METBU
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_2177_25

Not on your lists

21120..22292
DNA (1173bp) protein (391aa)
Transposase IS1111A/IS1328/IS1533 family protein n=1 Tax=uncultured archaeon RepID=D1JF10_9ARCH
Transposase IS1111A/IS1328/IS1533 family protein {ECO:0000313|EMBL:CBH37118.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
transposase IS116/IS110/IS902 family protein
Displaying 25 items

View Taxonomy