ggKbase home page

SR-VP_26_10_2019_C_40cm_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 195 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_104_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2..166
DNA (165bp) protein (55aa)
Universal stress protein n=2 Tax=Methanosarcina mazei RepID=M1Q1I2_METMZ
Universal stress protein UspA-like protein {ECO:0000313|EMBL:KCZ72244.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
universal stress protein
SR-VP_26_10_2019_C_40cm_scaffold_104_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

180..1043
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46F72_METBF
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ72245.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Inosine-5'-monophosphate dehydrogenase
SR-VP_26_10_2019_C_40cm_scaffold_104_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1049..1585)
DNA (537bp) protein (179aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
UPI0003D1BF3C related cluster n=1 Tax=unknown RepID=UPI0003D1BF3C
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_104_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1587..2123)
DNA (537bp) protein (179aa)
UPF0290 protein Mpsy_1082 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MMA3_9EURY
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_104_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2117..2581)
DNA (465bp) protein (155aa)
Deoxycytidylate deaminase {ECO:0000313|EMBL:KCZ72247.1}; EC=3.5.4.12 {ECO:0000313|EMBL:KCZ72247.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B80C related cluster n=1 Tax=unknown RepID=UPI0003D1B80C
CMP/dCMP deaminase zinc-binding protein
SR-VP_26_10_2019_C_40cm_scaffold_104_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2746..3672
DNA (927bp) protein (309aa)
Protein-export membrane protein SecF n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L1H3_METHD
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
preprotein translocase subunit SecF
SR-VP_26_10_2019_C_40cm_scaffold_104_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3669..5321
DNA (1653bp) protein (551aa)
UPI0003D1C6D3 related cluster n=1 Tax=unknown RepID=UPI0003D1C6D3
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Protein-export membrane protein SecD
SR-VP_26_10_2019_C_40cm_scaffold_104_trna_1
unknown

Not on your lists

5365..5438
DNA (74bp)
transferRNA Thr
SR-VP_26_10_2019_C_40cm_scaffold_104_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5908..6180
DNA (273bp) protein (91aa)
10 kDa chaperonin n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9S7_METMS
Co-chaperonin GroES {ECO:0000313|EMBL:KCZ71002.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
chaperonin Cpn10
SR-VP_26_10_2019_C_40cm_scaffold_104_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6182..7804
DNA (1623bp) protein (541aa)
Chaperonin GroL {ECO:0000313|EMBL:KCZ71001.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
groEL; molecular chaperone GroEL; K04077 chaperonin GroEL id=5041649 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
groEL; molecular chaperone GroEL
SR-VP_26_10_2019_C_40cm_scaffold_104_10
unknown

Not on your lists

comp(8068..8433)
DNA (366bp) protein (122aa)
Marine sediment metagenome DNA, contig: S01H1_S14953 {ECO:0000313|EMBL:GAG07835.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=721142 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_104_11
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8399..8689)
DNA (291bp) protein (97aa)
Nucleotidyltransferase n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQQ3_METH6
nucleotidyltransferase
Nucleotidyltransferase {ECO:0000313|EMBL:AET65687.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
SR-VP_26_10_2019_C_40cm_scaffold_104_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8778..9758
DNA (981bp) protein (327aa)
UPI0003D1AFB3 related cluster n=1 Tax=unknown RepID=UPI0003D1AFB3
Putative membrane protein (DUF2254) {ECO:0000313|EMBL:KCZ73357.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_104_13
unknown

Not on your lists

10064..10366
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RX62_FERPA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_104_14
unknown

Not on your lists

10363..10869
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RX61_FERPA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_104_15
unknown

Not on your lists

11485..11892
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E928_METEZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_104_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12143..12571
DNA (429bp) protein (143aa)
Flavoprotein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BY47_METCG
Putative flavoprotein {ECO:0000313|EMBL:KCZ71502.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
flavoprotein
SR-VP_26_10_2019_C_40cm_scaffold_104_17
unknown

Not on your lists

12582..12737
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q468A6_METBF
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_104_18
unknown

Not on your lists

12900..14093
DNA (1194bp) protein (398aa)
Putative flavoprotein n=1 Tax=uncultured archaeon RepID=Q2Y4G2_9ARCH
beta-lactamase domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_104_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14125..14316
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQC0_METH6
Uncharacterized protein {ECO:0000313|EMBL:KCZ71972.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_104_20
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14358..15962
DNA (1605bp) protein (535aa)
Histone acetyltransferase, ELP3 family n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQB1_METZD
histone acetyltransferase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_104_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15990..16730)
DNA (741bp) protein (247aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAS5_METEZ
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_104_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16849..17814
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQR6_METAC
Putative H4MPT-linked C1 transfer pathway protein {ECO:0000313|EMBL:KCZ72078.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_104_23
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18149..18433)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BH33_9EURY
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_104_24
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18522..18770)
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos26B2 RepID=Q64C65_9ARCH
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_104_25
unknown

Not on your lists

19545..19751
DNA (207bp) protein (69aa)
DNA modification methylase n=1 Tax=Clostridium difficile RepID=UPI00016C645E
putative DNA modification methylase
SR-VP_26_10_2019_C_40cm_scaffold_104_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19859..20077
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71934.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_104_27
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(20150..20359)
DNA (210bp) protein (70aa)
YcfA-like protein n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BV87_ANAMD
hypothetical protein
YcfA-like protein {ECO:0000313|EMBL:AFM21194.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA).;"
SR-VP_26_10_2019_C_40cm_scaffold_104_28
unknown

Not on your lists

comp(20331..20618)
DNA (288bp) protein (96aa)
Uncharacterized protein family UPF0150 n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z260_9EURY
Marine sediment metagenome DNA, contig: S12H4_L00748 {ECO:0000313|EMBL:GAI79920.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_104_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21245..21565
DNA (321bp) protein (107aa)
DNA modification methylase n=1 Tax=Clostridium difficile RepID=UPI00016C645E
putative DNA modification methylase
Uncharacterized protein {ECO:0000313|EMBL:CCL32167.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 195 in total

View Taxonomy