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SR-VP_26_10_2019_C_40cm_scaffold_1043

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_1043_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(847..1524)
DNA (678bp) protein (226aa)
Beta-phosphoglucomutase n=1 Tax=planctomycete KSU-1 RepID=I3INM9_9PLAN
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED {ECO:0000313|EMBL:KCZ72610.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
HAD-superfamily hydrolase, subfamily IA, variant 3
SR-VP_26_10_2019_C_40cm_scaffold_1043_2
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1565..1888)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YHN7_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX30156.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
SR-VP_26_10_2019_C_40cm_scaffold_1043_3
unknown

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2111..2497
DNA (387bp) protein (129aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1043_4
CG_Woesearch_02, Woesearchaeota, Archaea

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2481..3191
DNA (711bp) protein (237aa)
Tax=CG_Woesearch_02
SR-VP_26_10_2019_C_40cm_scaffold_1043_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3388..3594
DNA (207bp) protein (69aa)
50S ribosomal protein L18Ae n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQ46_METZD
50S ribosomal protein L18Ae {ECO:0000256|HAMAP-Rule:MF_00273}; 50S ribosomal protein L20e {ECO:0000256|HAMAP-Rule:MF_00273}; 50S ribosomal protein LX {ECO:0000256|HAMAP-Rule:MF_00273}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribosomal LX protein
SR-VP_26_10_2019_C_40cm_scaffold_1043_6
unknown

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3584..4024
DNA (441bp) protein (147aa)
Prefoldin subunit alpha n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EC10_METMS
prefoldin, subunit alpha
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1043_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4078..5124
DNA (1047bp) protein (349aa)
Signal recognition particle receptor FtsY n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZJ8_METBU
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
signal recognition particle-docking protein FtsY
SR-VP_26_10_2019_C_40cm_scaffold_1043_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5204..5944
DNA (741bp) protein (247aa)
Protein with 4-vinyl reductase domain and helix-turn-helix motif n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12Y49_METBU
Putative hydrocarbon binding protein (Contains V4R domain) {ECO:0000313|EMBL:KCZ71208.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4-vinyl reductase, 4VR
SR-VP_26_10_2019_C_40cm_scaffold_1043_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6168..7343)
DNA (1176bp) protein (392aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8P2_METEZ
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_1043_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7350..7820)
DNA (471bp) protein (157aa)
Putative signal transduction protein with CBS domains n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKY6_METZD
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ71198.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative signal transduction protein with CBS domains
SR-VP_26_10_2019_C_40cm_scaffold_1043_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7828..8838)
DNA (1011bp) protein (337aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXL5_METHD
N-acetyl-gamma-glutamyl-phosphate reductase, common form
SR-VP_26_10_2019_C_40cm_scaffold_1043_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8846..9283)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2V8_UNCMA
endonuclease III
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_1043_trna_1
unknown

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9495..9579
DNA (85bp)
transferRNA Leu
SR-VP_26_10_2019_C_40cm_scaffold_1043_13
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10399..11406
DNA (1008bp) protein (336aa)
Diguanylate cyclase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VE2_RHOFD
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABD70261.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SR-VP_26_10_2019_C_40cm_scaffold_1043_14
unknown

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11360..12412
DNA (1053bp) protein (351aa)
PAS domain S-box n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6U8C6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KKM85796.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_1043_15
unknown

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12443..13297
DNA (855bp) protein (285aa)
Putative PAS/PAC sensor protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3T6_METSW
PAS/PAC sensor protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1043_16
unknown

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13322..14020
DNA (699bp) protein (233aa)
RecA-superfamily ATPase implicated in signal transduction n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7T7_METMS
RecA-superfamily ATPase implicated in signal transduction
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1043_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14225..14827
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RZP3_FERPA
Uncharacterized protein {ECO:0000313|EMBL:KCZ73365.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_1043_18
unknown

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14922..16586
DNA (1665bp) protein (555aa)
ATP-dependent DNA ligase I (EC:6.5.1.1)
UPI0003D1BF0F related cluster n=1 Tax=unknown RepID=UPI0003D1BF0F
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1043_19
unknown

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16583..16738
DNA (156bp) protein (52aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1043_20
unknown

Not on your lists

16935..17135
DNA (201bp) protein (67aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1043_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17243..19129
DNA (1887bp) protein (629aa)
Arginine decarboxylase {ECO:0000256|RuleBase:RU003740}; EC=4.1.1.19 {ECO:0000256|RuleBase:RU003740};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
arginine decarboxylase (EC:4.1.1.19)
Arginine decarboxylase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJD0_CHLTF
SR-VP_26_10_2019_C_40cm_scaffold_1043_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19161..19697
DNA (537bp) protein (179aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PWQ8_METMA
Uncharacterized protein {ECO:0000313|EMBL:KCZ73367.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_1043_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19804..20748
DNA (945bp) protein (315aa)
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:KCZ73368.1}; EC=5.1.3.2 {ECO:0000313|EMBL:KCZ73368.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8THQ2_METAC
dTDP-glucose 4,6-dehydratase
SR-VP_26_10_2019_C_40cm_scaffold_1043_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20741..21781
DNA (1041bp) protein (347aa)
NMD3 family protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E7Z4_METEZ
NMD protein affecting ribosome stability and mRNA decay {ECO:0000313|EMBL:KCZ73369.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NMD3 family protein
SR-VP_26_10_2019_C_40cm_scaffold_1043_25
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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22009..22299
DNA (291bp) protein (97aa)
ferredoxin n=1 Tax=Sulfolobales archaeon Acd1 RepID=UPI000378A640
4Fe-4S ferredoxin
Tax=RBG_16_Bathyarchaeota_48_13_curated
SR-VP_26_10_2019_C_40cm_scaffold_1043_26
unknown

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comp(22302..22730)
DNA (429bp) protein (143aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1043_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22738..23310)
DNA (573bp) protein (191aa)
Rubrerythrin {ECO:0000313|EMBL:KCZ70402.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rubrerythrin id=1242329 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
rubrerythrin
SR-VP_26_10_2019_C_40cm_scaffold_1043_28
unknown

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comp(23442..23597)
DNA (156bp) protein (52aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1043_29
unknown

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comp(23725..23934)
DNA (210bp) protein (70aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying items 1-30 of 44 in total

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