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S28_scaffold_1854_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_1854_curated_1
Methanosarcina sp. WH1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..507
DNA (507bp) protein (169aa)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:AKB22674.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AKB22674.1};; TaxID=1434102 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WH1.;"
DNA-directed RNA polymerase subunit E n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PUY8_METMZ rbh
DNA-directed RNA polymerase subunit E' rbh
S28_scaffold_1854_curated_2
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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540..725
DNA (186bp) protein (62aa)
DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
Transcription elongation factor Spt4 n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PZ97_METMA
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
S28_scaffold_1854_curated_3
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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769..1314
DNA (546bp) protein (182aa)
UPF0218 protein MA_3694 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Y3694_METAC rbh
Uncharacterized protein {ECO:0000313|EMBL:KKH98919.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
hypothetical protein
S28_scaffold_1854_curated_4
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1295..1600
DNA (306bp) protein (102aa)
30S ribosomal protein S24e n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1QGA5_METMZ
SSU ribosomal protein S24e
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=1434117 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei WWM610.;"
S28_scaffold_1854_curated_5
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1622..1771
DNA (150bp) protein (50aa)
30S ribosomal protein S27ae n=4 Tax=Methanosarcina RepID=RS27A_METAC
SSU ribosomal protein S27Ae
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; TaxID=1434108 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri MS.;"
S28_scaffold_1854_curated_6
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2152..2316
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1Q799_METMZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF96028.1}; TaxID=1236903 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei Tuc01.;"
S28_scaffold_1854_curated_7
unknown

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comp(2771..3040)
DNA (270bp) protein (90aa)

This feature has no annotations

S28_scaffold_1854_curated_8
GWD1_Spirochaetes_27_9_curated, Spirochaetes, Bacteria

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3257..4336
DNA (1080bp) protein (360aa)
RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1)/Heavy Metal Efflux (HME) family, permease domain protein id=3027930 bin=GWC1_Spirochaetes_27_15 species=Leptospira meyeri genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes rbh
putative cation efflux system protein rbh
Tax=GWD1_Spirochaetes_27_9_curated
S28_scaffold_1854_curated_9
unknown

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4333..4794
DNA (462bp) protein (154aa)

This feature has no annotations

S28_scaffold_1854_curated_10
unknown

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comp(4846..5052)
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 10 items

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