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S28_scaffold_1083_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_1083_curated_1
Methanosarcina sp. 2.H.T.1A.6, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..511)
DNA (510bp) protein (170aa)
ATP-dependent DNA ligase-like protein of eukaryotic ligase III n=2 Tax=Methanosarcina mazei RepID=M1QID7_METMZ
ATP-dependent DNA ligase {ECO:0000313|EMBL:KKG25195.1}; TaxID=1483599 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.T.1A.6.;"
RNA ligase, family
S28_scaffold_1083_curated_2
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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669..1460
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH70_METAC rbh
DUF124 domain-containing protein
DUF124 domain-containing protein {ECO:0000313|EMBL:AKB73270.1}; TaxID=1434111 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina lacustris Z-7289.;"
S28_scaffold_1083_curated_3
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1797..2573)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH71_METAC rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:AKB76494.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
hypothetical protein rbh
S28_scaffold_1083_curated_4
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2918..3763)
DNA (846bp) protein (282aa)
CBS domain protein n=2 Tax=Methanosarcina mazei RepID=M1PWV2_METMZ rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:AKB76495.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
hypothetical protein rbh
S28_scaffold_1083_curated_5
unknown

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comp(4005..4172)
DNA (168bp) protein (56aa)

This feature has no annotations

S28_scaffold_1083_curated_6
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5384..6178)
DNA (795bp) protein (265aa)
CBS domain protein n=2 Tax=Methanosarcina mazei RepID=M1QID1_METMZ rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:AKB76497.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
CBS domain protein rbh
S28_scaffold_1083_curated_7
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6258..7001)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DV6_METBF rbh
Putative manganese-dependent inorganic pyrophosphatase {ECO:0000313|EMBL:AKB76498.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
hypothetical protein
S28_scaffold_1083_curated_8
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7990..9444)
DNA (1455bp) protein (485aa)
Replication factor-A protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PXC2_METMA rbh
Replication factor A (SsDNA-binding protein) {ECO:0000313|EMBL:AKB76499.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
replication factor A rbh
S28_scaffold_1083_curated_9
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10044..11126
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH78_METAC rbh
Uncharacterized protein {ECO:0000313|EMBL:KKH96529.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
hypothetical protein rbh
S28_scaffold_1083_curated_10
Methanosarcina sp. WWM596, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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11225..11878
DNA (654bp) protein (218aa)
Probable RNA 2'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00299}; EC=2.7.1.- {ECO:0000256|HAMAP-Rule:MF_00299};; TaxID=1434103 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WWM596.;"
Probable RNA 2'-phosphotransferase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=KPTA_METMA rbh
RNA:NAD 2'-phosphotransferase
Displaying 10 items

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