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13_1_40cm_3_scaffold_1085

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1085_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1..483)
DNA (483bp) protein (161aa)
Putative transcriptional regulator, ArsR family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILW7_NITGG
arsR family transcriptional regulator
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:AFU59742.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;"
13_1_40cm_3_scaffold_1085_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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610..1092
DNA (483bp) protein (161aa)
50S ribosomal protein L11 n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0INP7_NITGG rbh
rpl11p; 50S ribosomal protein L11p
R-protein L11p {ECO:0000313|EMBL:ADK26028.1}; Flags: Fragment;; TaxID=497727 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candida
13_1_40cm_3_scaffold_1085_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1209..3269
DNA (2061bp) protein (687aa)
Putative subtilase family protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIL2_NITGG
subtilase family protein
Putative subtilase family protein {ECO:0000313|EMBL:AFU59745.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitro
13_1_40cm_3_scaffold_1085_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3226..5805
DNA (2580bp) protein (860aa)
Putative subtilase family protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIL2_NITGG rbh
Putative subtilase family protein {ECO:0000313|EMBL:AFU59745.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitro
subtilase family protein
13_1_40cm_3_scaffold_1085_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5854..6213
DNA (360bp) protein (120aa)
Putative thioredoxin n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEH7_NITGG
trxA3; thioredoxin
Putative thioredoxin {ECO:0000313|EMBL:AFU59746.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gar
13_1_40cm_3_scaffold_1085_6
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6214..8007)
DNA (1794bp) protein (598aa)
Putative translation initiation factor IF-2 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILW8_NITGG rbh
translation initiation factor eaIF-5B
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;"
13_1_40cm_3_scaffold_1085_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8011..8415)
DNA (405bp) protein (135aa)
Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}; EC=2.7.4.6 {ECO:0000256|RuleBase:RU004013};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrosos
Nucleoside diphosphate kinase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKG5_NITGG
nucleoside diphosphate kinase
13_1_40cm_3_scaffold_1085_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8422..8637)
DNA (216bp) protein (72aa)
50S ribosomal protein L24e n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0INP8_NITGG
LSU ribosomal protein L24E
50S ribosomal protein L24e {ECO:0000256|HAMAP-Rule:MF_00773}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidat
13_1_40cm_3_scaffold_1085_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8642..8857)
DNA (216bp) protein (72aa)
30S ribosomal protein S28e n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IIL4_NITGG
rps28e; 30S ribosomal protein S28e
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrosos
13_1_40cm_3_scaffold_1085_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8873..9259)
DNA (387bp) protein (129aa)
50S ribosomal protein L7ae n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IEI0_NITGG
R-protein L7ae {ECO:0000313|EMBL:ADK26025.1}; Flags: Fragment;; TaxID=497727 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candida
rpl7ae; 50S ribosomal protein L7ae
13_1_40cm_3_scaffold_1085_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9330..9833)
DNA (504bp) protein (168aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000313|EMBL:AFU59752.1}; EC=5.4.2.10 {ECO:0000313|EMBL:AFU59752.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaerac
Phosphoglucosamine mutase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILX0_NITGG
13_1_40cm_3_scaffold_1085_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9841..10695)
DNA (855bp) protein (285aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000313|EMBL:AFU59752.1}; EC=5.4.2.10 {ECO:0000313|EMBL:AFU59752.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaerac
Phosphoglucosamine mutase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILX0_NITGG rbh
13_1_40cm_3_scaffold_1085_trna_1
unknown

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10760..10899
DNA (140bp)
transferRNA
13_1_40cm_3_scaffold_1085_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11392..12036)
DNA (645bp) protein (215aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase g
Glutamine amidotransferase subunit PdxT n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILX5_NITGG rbh
pdxT; glutamine amidotransferase subunit PdxT rbh
13_1_40cm_3_scaffold_1085_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12033..13004)
DNA (972bp) protein (324aa)
pdxS; pyridoxal biosynthesis lyase (EC:4.-.-.-)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKH5_NITGG rbh
13_1_40cm_3_scaffold_1085_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13046..13543)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00036E387C
Uncharacterized protein {ECO:0000313|EMBL:AIF83301.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
hypothetical protein
13_1_40cm_3_scaffold_1085_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13543..15417)
DNA (1875bp) protein (625aa)
Aconitate hydratase {ECO:0000313|EMBL:AFU59770.1}; EC=4.2.1.3 {ECO:0000313|EMBL:AFU59770.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Ni
aco; aconitate hydratase (EC:4.2.1.3) rbh
Aconitate hydratase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIM8_NITGG rbh
13_1_40cm_3_scaffold_1085_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(15989..16303)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEJ5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59771.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_3_scaffold_1085_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

16408..17214
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILX6_NITGG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFU59772.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_3_scaffold_1085_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17182..17805)
DNA (624bp) protein (208aa)
Transcription initiation factor IIB n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKH9_NITGG rbh
tfb9; transcription initiation factor IIB
Transcription initiation factor IIB {ECO:0000313|EMBL:AFU59773.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nit
Displaying 20 items

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