ggKbase | organisms

Advanced Search

Fischerella_thermalis_GCF_000317225_1_FisPCC7521_1_0

bacteria_Fischerella_thermalis_41_1

In projects: bacteria | novel_actino

Consensus taxonomy: Fischerella thermalis → Fischerella → Stigonematales → Cyanobacteria → Bacteria

Metagenomic Context

Properties

Avg. coverage: 1.00 Longest contig: 271.93 Kbp Bin length: 1.10 Mbp GC content: 41.10 %

Contigs count: 17 Features count: 955 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 34 / 55 BSCG 0 / 51 ASCG 0 / 38

Description

Fischerella thermalis PCC 7521 contig00018, whole genome shotgun sequence

Displaying 17 items

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
NZ_AJLL01000005	219	271929 bp	40.86	1.00	0.00
NZ_AJLL01000012	147	166063 bp	41.57	1.00	0.00
NZ_AJLL01000010	101	120957 bp	40.34	1.00	0.00
NZ_AJLL01000009	98	86997 bp	41.98	1.00	0.00
NZ_AJLL01000008	82	94183 bp	40.76	1.00	0.00
NZ_AJLL01000007	73	72329 bp	41.94	1.00	0.00
NZ_AJLL01000016	55	71358 bp	42.00	1.00	0.00
NZ_AJLL01000011	41	44998 bp	41.42	1.00	0.00
NZ_AJLL01000014	40	47877 bp	40.22	1.00	0.00
NZ_AJLL01000017	35	41125 bp	39.73	1.00	0.00
NZ_AJLL01000002	16	23528 bp	39.60	1.00	0.00
NZ_AJLL01000013	14	18708 bp	42.35	1.00	0.00
NZ_AJLL01000003	13	16172 bp	39.91	1.00	0.00
NZ_AJLL01000006	9	9638 bp	41.88	1.00	0.00
NZ_AJLL01000004	8	7871 bp	42.18	1.00	0.00
NZ_AJLL01000015	3	3438 bp	42.70	1.00	0.00
NZ_AJLL01000001	1	1028 bp	49.61	1.00	0.00

Displaying 17 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.