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Ig5181_scaffold_50884

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig5181_scaffold_50884_1
RBG_16_Deltaproteobacteria_44_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3..461
DNA (459bp) protein (153aa)
Putative general secretion pathway protein C bin=GWC2_Syntrophobacterales_56_13 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
PDZ/DHR/GLGF domain-containing protein
Tax=RBG_16_Deltaproteobacteria_44_11_curated
Ig5181_scaffold_50884_2
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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490..1356
DNA (867bp) protein (289aa)
Peptidoglycan-binding domain 1 protein bin=GWC2_Syntrophobacterales_56_13 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
peptidoglycan-binding domain 1 protein
Tax=BJP_IG2069_Syntrophobacterales_46_30
Ig5181_scaffold_50884_3
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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1390..2217
DNA (828bp) protein (276aa)
Uncharacterized protein {ECO:0000313|EMBL:KFO68695.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SCADC.;"
Tetratricopeptide repeat protein bin=GWC2_Syntrophobacterales_56_13 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Ig5181_scaffold_50884_4
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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2228..4498
DNA (2271bp) protein (757aa)
General secretion pathway protein D Tax=delta proteobacterium NaphS2 RepID=D8FE25_9DELT
general secretion pathway protein D
Tax=BJP_08E140C01_Syntrophobacterales_43_19
Ig5181_scaffold_50884_5
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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4523..6319
DNA (1797bp) protein (599aa)
General secretion pathway protein E bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
general secretory pathway protein E
Tax=BJP_08E140C01_Syntrophobacterales_43_19
Ig5181_scaffold_50884_6
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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6328..6915
DNA (588bp) protein (196aa)
Hypothetical cytosolic protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LV38_SYNAS
cytoplasmic protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_7
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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6958..7797
DNA (840bp) protein (280aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_8
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7965..9134
DNA (1170bp) protein (390aa)
Aminotransferase, class I and II Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LYC4_SYNAS
class I/II aminotransferase
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_9
Smithella sp. F21, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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9396..10424
DNA (1029bp) protein (343aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN39625.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. F21.;"
GTPase, probable translation factor bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
ychF; GTP-dependent nucleic acid-binding protein EngD
Ig5181_scaffold_50884_10
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10556..11824)
DNA (1269bp) protein (423aa)
Twitching motility PilT domain protein bin=GWC2_Syntrophobacterales_56_13 species=Desulfovibrio sp. A2 genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
twitching motility protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_trna_2
unknown

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comp(12063..12154)
DNA (92bp)
transferRNA Ser
Ig5181_scaffold_50884_trna_1
unknown

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comp(12311..12393)
DNA (83bp)
transferRNA Ser
Ig5181_scaffold_50884_11
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12430..12852)
DNA (423bp) protein (141aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU60_SYNAS
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_12
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12830..13495)
DNA (666bp) protein (222aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU60_SYNAS
Tax=BJP_IG2069_Syntrophobacterales_46_30
Ig5181_scaffold_50884_13
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13596..15182)
DNA (1587bp) protein (529aa)
Virulence factor protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU54_SYNAS
virulence factor protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_14
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15237..15554)
DNA (318bp) protein (106aa)
UPF0235 protein Gura_1167 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAM3_GEOUR
hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_15
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15568..15864)
DNA (297bp) protein (99aa)
Hypothetical membrane protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU56_SYNAS
hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_16
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15886..16662)
DNA (777bp) protein (259aa)
Alpha/beta hydrolase fold bin=GWC2_Syntrophobacterales_56_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
alpha/beta hydrolase
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_17
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16745..17512
DNA (768bp) protein (256aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU57_SYNAS
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_18
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17566..18345
DNA (780bp) protein (260aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein bin=GWC2_Syntrophobacterales_56_13 species=marine gamma proteobacterium HTCC2143 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
oxidoreductase, short chain dehydrogenase/reductase family
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_19
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18525..18866
DNA (342bp) protein (114aa)
id=4409733 bin=GWC2_Syntrophobacterales_56_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_20
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19201..19968
DNA (768bp) protein (256aa)
Putative crotonase Tax=Limnobacter sp. MED105 RepID=A6GQF1_9BURK
enoyl-CoA hydratase/isomerase
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_21
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20455..21192
DNA (738bp) protein (246aa)
Transcriptional regulator, TetR family Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QF26_DESB2
TetR family transcriptional regulator
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Ig5181_scaffold_50884_22
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21224..21304
DNA (81bp) protein (27aa)
Tax=BJP_IG2069_Syntrophobacterales_46_30
Displaying 24 items

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