ggKbase home page

SRVP18_trench_6_60cm_scaffold_5578

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SRVP18_trench_6_60cm_scaffold_5578_1
unknown

Not on your lists

2..274
DNA (273bp) protein (91aa)
tpiA; Triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Methanobacterium sp. MB1 RepID=U6E9M1_9EURY
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(315..1646)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PTM3_METMA
Flavin containing amine oxidoreductase {ECO:0000313|EMBL:KCZ73183.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SRVP18_trench_6_60cm_scaffold_5578_trna_1
unknown

Not on your lists

1981..2055
DNA (75bp)
transferRNA Pro
SRVP18_trench_6_60cm_scaffold_5578_3
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2129..3403
DNA (1275bp) protein (425aa)
glutamate dehydrogenase (EC:1.4.1.2 1.4.1.3)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens MM1.;"
Glutamate dehydrogenase id=4830576 bin=GWC2_Nitrospirae_57_13 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
SRVP18_trench_6_60cm_scaffold_5578_4
unknown

Not on your lists

comp(3398..4258)
DNA (861bp) protein (287aa)
Agmatinase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZD9_METPS
speB; agmatinase
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_5
unknown

Not on your lists


comp(4259..4645)
DNA (387bp) protein (129aa)
Translation initiation factor 5A n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KTK6_METHD
translation initiation factor eIF-5A
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_6
unknown

Not on your lists

4742..5407
DNA (666bp) protein (222aa)
Ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component 3 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XML5_METZD
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_7
unknown

Not on your lists

5404..5778
DNA (375bp) protein (125aa)
Ribonuclease P protein component 2 n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQG5_METH6
ribonuclease P protein component 2
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_8
unknown

Not on your lists

5910..6683
DNA (774bp) protein (258aa)
Proteasome subunit alpha, archaeal (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=PSA_METBF
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_9
unknown

Not on your lists


6691..7338
DNA (648bp) protein (216aa)
Shwachman-Bodian-Diamond syndrome protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B8W5_METTP
putative RNA-associated protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_10
unknown

Not on your lists

7284..8111
DNA (828bp) protein (276aa)
Exosome complex component Rrp4 n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B8W4_METTP
exosome complex RNA-binding protein Rrp4
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5578_11
unknown

Not on your lists

8163..8780
DNA (618bp) protein (206aa)
rrp41p; putative exosome complex exonuclease 1 (EC:3.1.13.-)
Exosome complex component Rrp41 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y8_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 12 items

View Taxonomy