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CARSLU_52

Alias: CARSLU_34

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARSLU_52_1
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2..268
DNA (267bp) protein (89aa)
Staphylococcal tandem lipoprotein n=2 Tax=Staphylococcus lugdunensis RepID=E6MC43_STALU (db=UNIREF evalue=9.0e-44 bit_score=179.0 identity=100.0 coverage=97.752808988764)
hypothetical protein
(db=HMMPfam db_id=PF04507 from=1 to=84 evalue=2.4e-41 interpro_id=IPR007595 interpro_description=Protein of unknown function DUF576)
Tandem lipoprotein {ECO:0000313|EMBL:EFU83549.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
CARSLU_52_2
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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265..888
DNA (624bp) protein (208aa)
hypothetical protein
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=23 to=189 evalue=3.3e-11)
Uncharacterized protein {ECO:0000313|EMBL:EFU83548.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
Uncharacterized protein n=5 Tax=Staphylococcus lugdunensis RepID=K8N5T9_STALU
CARSLU_52_3
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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885..1589
DNA (705bp) protein (235aa)
hypothetical protein
seg (db=Seg db_id=seg from=104 to=115)
Uncharacterized protein n=5 Tax=Staphylococcus lugdunensis RepID=K8N5T9_STALU
Uncharacterized protein {ECO:0000313|EMBL:EFU83548.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
CARSLU_52_4
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1589..1915
DNA (327bp) protein (109aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=76 to=97 evalue=NA)
coiled-coil (db=Coil db_id=coil from=8 to=40 evalue=NA)
ENVOPLAKIN (db=HMMPanther db_id=PTHR23169 from=16 to=46 evalue=8.3e-05)
CARSLU_52_5
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1918..2205
DNA (288bp) protein (96aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFU83546.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
Uncharacterized protein n=5 Tax=Staphylococcus lugdunensis RepID=K8N9C9_STALU
CARSLU_52_6
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2622..3584)
DNA (963bp) protein (321aa)
L-lactate dehydrogenase 1 n=2 Tax=Staphylococcus lugdunensis RepID=D3QEZ3_STALH (db=UNIREF evalue=0.0 bit_score=652.0 identity=100.0 coverage=99.3769470404984)
ldh2; L-lactate dehydrogenase 2 (EC:1.1.1.27)
ldh2; L-lactate dehydrogenase 2 (EC:1.1.1.27)
L_LDH (db=PatternScan db_id=PS00064 from=175 to=181 evalue=0.0 interpro_id=IPR018177 interpro_description=L-lactate dehydrogenase, active site GO=Molecular Function: L-lactate dehydrogenase activity (GO:0004459), Biological Process: oxidation-reduction process (GO:0055114))
CARSLU_52_7
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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4294..4926
DNA (633bp) protein (211aa)
Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family n=2 Tax=Staphylococcus lugdunensis RepID=D3QEZ4_STALH (db=UNIREF evalue=2.0e-105 bit_score=384.0 identity=99.47 coverage=89.0995260663507)
GntR family transcriptional regulator
GntR family transcriptional regulator
seg (db=Seg db_id=seg from=189 to=202)
CARSLU_52_8
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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5515..6168
DNA (654bp) protein (218aa)
Predicted galactosamine-6-phosphate isomerase n=2 Tax=Staphylococcus lugdunensis RepID=D3QEZ5_STALH (db=UNIREF evalue=2.0e-123 bit_score=445.0 identity=98.62 coverage=99.0825688073395)
putative phosphosugar isomerase
putative phosphosugar isomerase
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
CARSLU_52_9
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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6652..7584
DNA (933bp) protein (311aa)
Tagatose 1,6-diphosphate aldolase n=2 Tax=Staphylococcus lugdunensis RepID=D3QEZ6_STALH (db=UNIREF evalue=3.0e-172 bit_score=608.0 identity=99.35 coverage=99.3569131832797)
DeoC/LacD family aldolase
DeoC/LacD family aldolase
seg (db=Seg db_id=seg from=215 to=226)
CARSLU_52_10
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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7784..8263
DNA (480bp) protein (160aa)
Predicted PTS system, galactosamine-specific IIB component n=2 Tax=Staphylococcus lugdunensis RepID=D3QEZ7_STALH (db=UNIREF evalue=2.0e-86 bit_score=320.0 identity=100.0 coverage=98.75)
PTS system IIB component
PTS system IIB component
(db=HMMPfam db_id=PF03830 from=3 to=151 evalue=1.0e-51 interpro_id=IPR004720 interpro_description=Phosphotransferase system, sorbose subfamily IIB component GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: protein-N(PI)-phosphohistidine-sugar phosphotransferase activity (GO:0008982), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401))
CARSLU_52_11
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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8283..9182
DNA (900bp) protein (300aa)
PTS system IIC component rbh
PTS system IIC component rbh
PTS system, IIC component n=2 Tax=Staphylococcus lugdunensis RepID=D3QEZ8_STALH (db=UNIREF evalue=5.0e-154 bit_score=547.0 identity=100.0 coverage=95.6666666666667)
transmembrane_regions (db=TMHMM db_id=tmhmm from=212 to=234)
CARSLU_52_12
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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9166..10059
DNA (894bp) protein (298aa)
PTS system IID component rbh
PTS system IID component rbh
PTS system, IID component n=2 Tax=Staphylococcus lugdunensis RepID=D3QEZ9_STALH (db=UNIREF evalue=5.0e-150 bit_score=534.0 identity=100.0 coverage=91.9463087248322)
PTS_EIID (db=ProfileScan db_id=PS51108 from=33 to=294 evalue=0.0 interpro_id=IPR004704 interpro_description=Phosphotransferase system, mannose/fructose/sorbose family IID component GO=Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401), Cellular Component: integral to membrane (GO:0016021))
CARSLU_52_13
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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10077..10472
DNA (396bp) protein (132aa)
Predicted PTS system, galactosamine-specific IIA component n=2 Tax=Staphylococcus lugdunensis RepID=D3QF00_STALH (db=UNIREF evalue=2.0e-70 bit_score=267.0 identity=100.0 coverage=98.4848484848485)
PTS system transporter subunit IIA
(db=HMMPfam db_id=PF03610 from=3 to=101 evalue=1.4e-27 interpro_id=IPR004701 interpro_description=Phosphotransferase system, fructose subfamily IIA component GO=Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401), Cellular Component: integral to membrane (GO:0016021))
IIA domain of mannose transporter, IIA-Man (db=superfamily db_id=SSF53062 from=1 to=121 evalue=2.3e-27 interpro_id=IPR004701 interpro_description=Phosphotransferase system, fructose subfamily IIA component GO=Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401), Cellular Component: integral to membrane (GO:0016021))
CARSLU_52_14
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10453..10674
DNA (222bp) protein (74aa)
10453..10674 + ( gc_cont=0.311)
hypothetical protein
CARSLU_52_15
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10640..11341)
DNA (702bp) protein (234aa)
kdpE(SCCmec); response regulator protein
kdpE(SCCmec); response regulator protein
DNA-binding response regulator KdpE n=2 Tax=Staphylococcus lugdunensis RepID=D3QF01_STALH (db=UNIREF evalue=7.0e-122 bit_score=439.0 identity=100.0 coverage=98.7179487179487)
seg (db=Seg db_id=seg from=48 to=62)
CARSLU_52_16
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11343..13388)
DNA (2046bp) protein (682aa)
kdpD(SCCmec); sensor kinase protein
kdpD(SCCmec); sensor kinase protein
Osmosensitive K+ channel histidine kinase KdpD n=2 Tax=Staphylococcus lugdunensis RepID=D3QF02_STALH (db=UNIREF evalue=0.0 bit_score=1263.0 identity=99.71 coverage=99.7067448680352)
seg (db=Seg db_id=seg from=209 to=221)
CARSLU_52_17
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13433..13897)
DNA (465bp) protein (155aa)
Osmosensitive K+ channel histidine kinase KdpD n=2 Tax=Staphylococcus lugdunensis RepID=D3QF02_STALH (db=UNIREF evalue=3.0e-81 bit_score=303.0 identity=100.0 coverage=92.9032258064516)
kdpD(SCCmec); sensor kinase protein
(db=HMMPfam db_id=PF02702 from=1 to=146 evalue=6.5e-55 interpro_id=IPR003852 interpro_description=Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO=Molecular Function: two-component sensor activity (GO:0000155), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: protein histidine kinase activity (GO:0004673), Cellular Component: membrane (GO:0016020))
SENSOR HISTIDINE KINASE KDPD (db=HMMPanther db_id=PTHR23283:SF7 from=1 to=145 evalue=2.2e-47)
CARSLU_52_18
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14268..15944
DNA (1677bp) protein (559aa)
kdpA(SCCmec); potassium-transporting ATPase A chain (EC:3.6.3.12) rbh
kdpA(SCCmec); potassium-transporting ATPase A chain (EC:3.6.3.12) rbh
Potassium-transporting ATPase A chain n=2 Tax=Staphylococcus lugdunensis RepID=D3QF03_STALH (db=UNIREF evalue=0.0 bit_score=901.0 identity=99.82 coverage=99.6422182468694)
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=186)
CARSLU_52_19
unknown

Not on your lists

comp(16587..16796)
DNA (210bp) protein (70aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=67)
seg (db=Seg db_id=seg from=36 to=56)
CARSLU_52_20
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16969..17337
DNA (369bp) protein (123aa)
Potassium-transporting ATPase B chain n=2 Tax=Staphylococcus lugdunensis RepID=D3QF04_STALH (db=UNIREF evalue=5.0e-67 bit_score=256.0 identity=99.18 coverage=98.3739837398374)
potassium-transporting ATPase subunit B (EC:3.6.3.12)
POTASSIUM-TRANSPORTING ATPASE B CHAIN (POTASSIUM- TRANSLOCATING ATPASE B CHAIN) (db=HMMPanther db_id=PTHR11939:SF27 from=1 to=122 evalue=4.4e-37)
CATION-TRANSPORTING ATPASE (db=HMMPanther db_id=PTHR11939 from=1 to=122 evalue=4.4e-37)
CARSLU_52_21
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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17365..18048
DNA (684bp) protein (228aa)
Potassium-transporting ATPase B chain n=2 Tax=Staphylococcus lugdunensis RepID=D3QF04_STALH (db=UNIREF evalue=1.0e-126 bit_score=455.0 identity=99.12 coverage=99.1228070175439)
potassium-transporting ATPase subunit B (EC:3.6.3.12)
transmembrane_regions (db=TMHMM db_id=tmhmm from=162 to=181)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=223)
CARSLU_52_22
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18065..18628
DNA (564bp) protein (188aa)
kdpC(SCCmec); potassium-transporting ATPase C chain
kdpC(SCCmec); potassium-transporting ATPase C chain
Potassium-transporting ATPase C chain n=2 Tax=Staphylococcus lugdunensis RepID=D3QF05_STALH (db=UNIREF evalue=2.0e-92 bit_score=341.0 identity=100.0 coverage=98.936170212766)
seg (db=Seg db_id=seg from=83 to=99)
CARSLU_52_23
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18935..21007)
DNA (2073bp) protein (691aa)
IsdB; IsdB-like LPXTG cell wall-anchored NEAT domain protein rbh
IsdB; IsdB-like LPXTG cell wall-anchored NEAT domain protein rbh
Surface protein SasI n=2 Tax=Staphylococcus lugdunensis RepID=D3QF06_STALH (db=UNIREF evalue=0.0 bit_score=1217.0 identity=98.99 coverage=99.7105643994211)
transmembrane_regions (db=TMHMM db_id=tmhmm from=666 to=683)
CARSLU_52_24
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21462..21980
DNA (519bp) protein (173aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
seg (db=Seg db_id=seg from=44 to=57)
seg (db=Seg db_id=seg from=3 to=20)
CARSLU_52_25
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21982..22689
DNA (708bp) protein (236aa)
Transmembrane component of energizing module of predicted ECF transporter n=2 Tax=Staphylococcus lugdunensis RepID=D3QF08_STALH (db=UNIREF evalue=8.0e-132 bit_score=473.0 identity=99.57 coverage=99.1525423728814)
putative ABC transporter subunit
putative ABC transporter subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=212 to=234)
CARSLU_52_26
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22701..24161
DNA (1461bp) protein (487aa)
hypothetical ABC transporter subunit
hypothetical ABC transporter subunit
Duplicated ATPase component of energizing module of predicted ECF transporter n=2 Tax=Staphylococcus lugdunensis RepID=D3QF09_STALH (db=UNIREF evalue=0.0 bit_score=926.0 identity=98.77 coverage=99.5893223819302)
seg (db=Seg db_id=seg from=227 to=240)
CARSLU_52_27
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(24246..25805)
DNA (1560bp) protein (520aa)
IsdJ; putative LPXTG cell wall-anchored NEAT domain protein
IsdJ; putative LPXTG cell wall-anchored NEAT domain protein
Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC n=2 Tax=Staphylococcus lugdunensis RepID=D3QF10_STALH (db=UNIREF evalue=0.0 bit_score=795.0 identity=100.0 coverage=99.4230769230769)
transmembrane_regions (db=TMHMM db_id=tmhmm from=490 to=512)
Displaying 27 items

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