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CARSLU_67

Alias: CARSLU_31

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARSLU_67_1
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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218..1753
DNA (1536bp) protein (512aa)
putative PTS system, IIBC component rbh
putative PTS system, IIBC component rbh
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific n=3 Tax=Staphylococcus RepID=Q4L9K8_STAHJ (db=UNIREF evalue=0.0 bit_score=839.0 identity=90.41 coverage=99.609375)
transmembrane_regions (db=TMHMM db_id=tmhmm from=281 to=303)
CARSLU_67_2
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1959..2726)
DNA (768bp) protein (256aa)
3-oxoacyl-ACP reductase
3-oxoacyl-ACP reductase
3-oxoacyl-(Acyl carrier protein) reductase-like protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QFV0_STALH (db=UNIREF evalue=3.0e-136 bit_score=488.0 identity=99.22 coverage=99.21875)
seg (db=Seg db_id=seg from=201 to=218)
CARSLU_67_3
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2750..3031)
DNA (282bp) protein (94aa)
Acyl-CoA reductase superfamily protein n=2 Tax=Staphylococcus lugdunensis RepID=E6MBP0_STALU (db=UNIREF evalue=1.0e-47 bit_score=192.0 identity=97.85 coverage=97.8723404255319)
LuxC family protein
(db=HMMPfam db_id=PF05893 from=3 to=73 evalue=2.3e-12 interpro_id=IPR008670 interpro_description=Acyl-CoA reductase, LuxC GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: bioluminescence (GO:0008218), Biological Process: oxidation-reduction process (GO:0055114))
Acyl-CoA reductase {ECO:0000256|PIRNR:PIRNR009414}; EC=1.2.1.50 {ECO:0000256|PIRNR:PIRNR009414};; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococ
CARSLU_67_4
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4213..5280)
DNA (1068bp) protein (356aa)
Long-chain-fatty-acid--luciferin-component ligase n=2 Tax=Staphylococcus lugdunensis RepID=D3QFV2_STALH (db=UNIREF evalue=0.0 bit_score=745.0 identity=100.0 coverage=99.438202247191)
Long-chain-fatty-acid--luciferin-component ligase (EC:6.2.1.19) rbh
Long-chain-fatty-acid--luciferin-component ligase (EC:6.2.1.19) rbh
(db=HMMPfam db_id=PF04443 from=18 to=348 evalue=9.3e-30 interpro_id=IPR007534 interpro_description=Acyl-protein synthetase, LuxE GO=Biological Process: bioluminescence (GO:0008218), Molecular Function: long-chain fatty acid luciferin component ligase activity (GO:0047474))
CARSLU_67_5
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5782..6354
DNA (573bp) protein (191aa)
membrane protein
membrane protein
Putative uncharacterized protein n=1 Tax=Staphylococcus lugdunensis M23590 RepID=E6MBN8_STALU (db=UNIREF evalue=3.0e-93 bit_score=343.0 identity=99.47 coverage=98.9528795811518)
seg (db=Seg db_id=seg from=65 to=78)
CARSLU_67_6
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6727..8109)
DNA (1383bp) protein (461aa)
major facilitator superfamily protein
major facilitator superfamily protein
Transmembrane efflux pump protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QFV4_STALH (db=UNIREF evalue=0.0 bit_score=688.0 identity=99.56 coverage=99.1323210412148)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
CARSLU_67_7
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(8116..11148)
DNA (3033bp) protein (1011aa)
NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit n=2 Tax=Staphylococcus lugdunensis RepID=E6MBN6_STALU (db=UNIREF evalue=0.0 bit_score=2050.0 identity=99.8 coverage=99.8021760633037)
NADH-dependent flavin oxidoreductase rbh
NADH-dependent flavin oxidoreductase rbh
seg (db=Seg db_id=seg from=505 to=518)
CARSLU_67_8
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11226..12173)
DNA (948bp) protein (316aa)
Thiamine biosynthesis lipoprotein n=2 Tax=Staphylococcus lugdunensis RepID=E6MBN5_STALU (db=UNIREF evalue=6.0e-173 bit_score=610.0 identity=95.24 coverage=96.5189873417722)
ApbE family protein
ApbE family protein
seg (db=Seg db_id=seg from=250 to=263)
CARSLU_67_9
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12469..12981
DNA (513bp) protein (171aa)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EFU83390.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
Uncharacterized protein n=5 Tax=Staphylococcus lugdunensis RepID=K8N5F7_STALU
CARSLU_67_10
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13495..14310
DNA (816bp) protein (272aa)
aminotransferase
AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751:SF21 from=56 to=260 evalue=3.4e-70)
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=56 to=260 evalue=3.4e-70)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=1 to=270 evalue=3.7e-61 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
CARSLU_67_11
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14332..14694
DNA (363bp) protein (121aa)
aminotransferase
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=1 to=118 evalue=3.2e-32)
AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751:SF21 from=1 to=118 evalue=3.2e-32)
no description (db=Gene3D db_id=G3DSA:3.90.1150.10 from=1 to=118 evalue=2.3e-26 interpro_id=IPR015422 interpro_description=Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: pyridoxal phosphate binding (GO:0030170))
CARSLU_67_12
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15198..15500
DNA (303bp) protein (101aa)
membrane protein
seg (db=Seg db_id=seg from=53 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
CARSLU_67_13
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16042..17394
DNA (1353bp) protein (451aa)
Dihydrolipoyl dehydrogenase n=2 Tax=Staphylococcus lugdunensis RepID=D3QFW0_STALH (db=UNIREF evalue=0.0 bit_score=905.0 identity=99.78 coverage=99.5565410199557)
pyridine nucleotide-disulfide oxidoreductase family protein rbh
pyridine nucleotide-disulfide oxidoreductase family protein rbh
PYRIDINE_REDOX_1 (db=PatternScan db_id=PS00076 from=39 to=49 evalue=0.0 interpro_id=IPR012999 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO=Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor (GO:0016668), Biological Process: oxidation-reduction process (GO:0055114))
CARSLU_67_14
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17483..18430
DNA (948bp) protein (316aa)
acetoin dehydrogenase E1 component subunit alpha
acetoin dehydrogenase E1 component subunit alpha
Pyruvate dehydrogenase E1 component subunit alpha n=2 Tax=Staphylococcus warneri RepID=C4W842_STAWA (db=UNIREF evalue=2.0e-153 bit_score=545.0 identity=91.11 coverage=99.3670886075949)
seg (db=Seg db_id=seg from=277 to=290)
CARSLU_67_15
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18446..19486
DNA (1041bp) protein (347aa)
Acetoin dehydrogenase E1 component beta-subunit n=2 Tax=Staphylococcus lugdunensis RepID=D3QFW2_STALH (db=UNIREF evalue=0.0 bit_score=677.0 identity=99.42 coverage=99.4236311239193)
putative transketolase rbh
putative transketolase rbh
seg (db=Seg db_id=seg from=135 to=142)
CARSLU_67_16
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19504..20706
DNA (1203bp) protein (401aa)
dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex
dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex
Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex n=2 Tax=Staphylococcus lugdunensis RepID=D3QFW3_STALH (db=UNIREF evalue=0.0 bit_score=704.0 identity=89.28 coverage=99.501246882793)
seg (db=Seg db_id=seg from=78 to=98)
CARSLU_67_17
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20852..21190
DNA (339bp) protein (113aa)
transcriptional regulator, PadR family
Transcriptional regulator, PadR family n=2 Tax=Staphylococcus lugdunensis RepID=D3QFW4_STALH (db=UNIREF evalue=1.0e-47 bit_score=192.0 identity=99.11 coverage=98.2300884955752)
seg (db=Seg db_id=seg from=9 to=23)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=106 evalue=9.3e-23)
CARSLU_67_18
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21180..21944
DNA (765bp) protein (255aa)
membrane protein rbh
membrane protein rbh
Putative uncharacterized protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QFW5_STALH (db=UNIREF evalue=2.0e-127 bit_score=458.0 identity=99.61 coverage=99.2156862745098)
transmembrane_regions (db=TMHMM db_id=tmhmm from=220 to=242)
CARSLU_67_19
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22560..22889)
DNA (330bp) protein (110aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFU83381.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
Uncharacterized protein n=5 Tax=Staphylococcus lugdunensis RepID=K8N1H1_STALU
CARSLU_67_20
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25570..26130
DNA (561bp) protein (187aa)
Activator of the mannose operon (Transcriptional antiterminator), BglG family n=2 Tax=Staphylococcus lugdunensis RepID=D3QFW8_STALH (db=UNIREF evalue=1.0e-105 bit_score=384.0 identity=99.46 coverage=98.9304812834225)
transcriptional regulator
Phoshotransferase/anion transport protein (db=superfamily db_id=SSF55804 from=47 to=186 evalue=5.7e-19 interpro_id=IPR016152 interpro_description=Phosphotransferase/anion transporter GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
(db=HMMPfam db_id=PF00359 from=58 to=170 evalue=8.4e-18 interpro_id=IPR002178 interpro_description=Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2 GO=Molecular Function: sugar:hydrogen symporter activity (GO:0005351), Biological Process: transport (GO:0006810), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401))
CARSLU_67_21
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26210..28159
DNA (1950bp) protein (650aa)
putative PTS transport system, IIABC component
putative PTS transport system, IIABC component
PTS system, mannose-specific IIB component/PTS system, mannose-specific IIC component/PTS system, mannose-specific IIA component n=2 Tax=Staphylococcus lugdunensis RepID=D3QFW9_STALH (db=UNIREF evalue=0.0 bit_score=1125.0 identity=99.69 coverage=99.6923076923077)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=158)
CARSLU_67_22
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28175..29113
DNA (939bp) protein (313aa)
pmi; mannose-6-phosphate isomerase (EC:5.3.1.8)
pmi; mannose-6-phosphate isomerase (EC:5.3.1.8)
Mannose-6-phosphate isomerase n=2 Tax=Staphylococcus lugdunensis RepID=D3QFX0_STALH (db=UNIREF evalue=0.0 bit_score=645.0 identity=99.68 coverage=99.3610223642172)
Mannose-6-phosphate isomerase, Firmicutes type, short form (db=HMMPIR db_id=PIRSF036894 from=1 to=312 evalue=5.3e-174 interpro_id=IPR014628 interpro_description=Mannose-6-phosphate isomerase, Firmicutes type, short form GO=Molecular Function: mannose-6-phosphate isomerase activity (GO:0004476))
CARSLU_67_23
Staphylococcus haemolyticus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29523..30029)
DNA (507bp) protein (169aa)
hypothetical protein
seg (db=Seg db_id=seg from=134 to=146)
CYTOCHROME_P450 (db=PatternScan db_id=PS00086 from=112 to=121 evalue=0.0 interpro_id=IPR017972 interpro_description=Cytochrome P450, conserved site GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
Cytochrome P450 (db=superfamily db_id=SSF48264 from=1 to=167 evalue=2.0e-40 interpro_id=IPR001128 interpro_description=Cytochrome P450 GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Molecular Function: heme binding (GO:0020037), Biological Process: oxidation-reduction process (GO:0055114))
Displaying 23 items

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