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CARSLU_77

Alias: CARSLU_22

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARSLU_77_1
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(61..1305)
DNA (1245bp) protein (415aa)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2)
NAD-specific glutamate dehydrogenase n=104 Tax=Staphylococcaceae RepID=DHE2_STAAC (db=UNIREF evalue=0.0 bit_score=818.0 identity=94.93 coverage=99.5180722891566)
GLFV_DEHYDROGENASE (db=PatternScan db_id=PS00074 from=100 to=113 evalue=0.0 interpro_id=IPR006095 interpro_description=Glutamate/phenylalanine/leucine/valine dehydrogenase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
CARSLU_77_2
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1891..3021)
DNA (1131bp) protein (377aa)
Oye family NADH-dependent flavin oxidoreductase n=2 Tax=Staphylococcus lugdunensis RepID=E6M8P5_STALU (db=UNIREF evalue=0.0 bit_score=773.0 identity=99.2 coverage=99.4694960212202)
NADH-dependent flavin oxidoreductase
NADH-dependent flavin oxidoreductase
FMN-linked oxidoreductases (db=superfamily db_id=SSF51395 from=4 to=361 evalue=1.9e-82)
CARSLU_77_3
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3219..3599)
DNA (381bp) protein (127aa)
putative S1 RNA binding domain
General stress protein 13 n=99 Tax=Staphylococcus RepID=Q5HQK7_STAEQ (db=UNIREF evalue=5.0e-65 bit_score=249.0 identity=94.44 coverage=98.4251968503937)
no description (db=HMMSmart db_id=SM00316 from=6 to=76 evalue=2.0e-21 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=5 to=89 evalue=3.4e-21 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
CARSLU_77_4
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3886..4479)
DNA (594bp) protein (198aa)
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Staphylococcus lugdunensis RepID=D3QE40_STALH (db=UNIREF evalue=3.0e-111 bit_score=404.0 identity=99.49 coverage=98.989898989899)
CSA_PPIASE_1 (db=PatternScan db_id=PS00170 from=52 to=69 evalue=0.0 interpro_id=IPR020892 interpro_description=Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO=Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755), Biological Process: protein folding (GO:0006457))
CARSLU_77_5
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4548..4928
DNA (381bp) protein (127aa)
Kinase-associated protein B n=2 Tax=Staphylococcus lugdunensis RepID=E6M8P8_STALU (db=UNIREF evalue=3.0e-67 bit_score=257.0 identity=98.41 coverage=98.4251968503937)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=81 to=102 evalue=NA)
(db=HMMPfam db_id=PF08810 from=7 to=118 evalue=1.1e-47 interpro_id=IPR014916 interpro_description=Kinase associated protein B)
CARSLU_77_6
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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5058..7475
DNA (2418bp) protein (806aa)
mnhA; Na+/H+ antiporter subunit rbh
mnhA; Na+/H+ antiporter subunit rbh
Na(+) H(+) antiporter subunit A n=2 Tax=Staphylococcus lugdunensis RepID=D3QE42_STALH (db=UNIREF evalue=0.0 bit_score=1443.0 identity=100.0 coverage=99.7518610421836)
transmembrane_regions (db=TMHMM db_id=tmhmm from=375 to=397)
CARSLU_77_7
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7456..7884
DNA (429bp) protein (143aa)
mnhB; Na+/H+ antiporter subunit
Na(+) H(+) antiporter subunit B n=2 Tax=Staphylococcus lugdunensis RepID=D3QE43_STALH (db=UNIREF evalue=5.0e-68 bit_score=259.0 identity=100.0 coverage=98.6013986013986)
seg (db=Seg db_id=seg from=127 to=139)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
CARSLU_77_8
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7884..8231
DNA (348bp) protein (116aa)
mnhC; Na+/H+ antiporter subunit
Na(+) H(+) antiporter subunit C n=2 Tax=Staphylococcus lugdunensis RepID=D3QE44_STALH (db=UNIREF evalue=2.0e-45 bit_score=184.0 identity=99.13 coverage=98.2758620689655)
2a6301s03 (db=HMMTigr db_id=TIGR00941 from=1 to=104 evalue=9.60000000000003e-49 interpro_id=IPR006673 interpro_description=Multicomponent Na+:H+ antiporter GO=Biological Process: cation transport (GO:0006812), Molecular Function: cation transmembrane transporter activity (GO:0008324))
Oxidored_q2 (db=HMMPfam db_id=PF00420 from=5 to=106 evalue=3.90000000000001e-24 interpro_id=IPR001133 interpro_description=NADH-ubiquinone oxidoreductase chain 4L/K GO=Molecular Function: oxidoreductase activity, acting on NADH or NADPH (GO:0016651), Biological Process: ATP synthesis coupled electron transport (GO:0042773), Biological Process: oxidation-reduction process (GO:0055114))
CARSLU_77_9
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8218..9714
DNA (1497bp) protein (499aa)
mnhD; Na+/H+ antiporter subunit
mnhD; Na+/H+ antiporter subunit
Na(+) H(+) antiporter subunit D n=2 Tax=Staphylococcus lugdunensis RepID=D3QE45_STALH (db=UNIREF evalue=0.0 bit_score=778.0 identity=99.8 coverage=99.5991983967936)
transmembrane_regions (db=TMHMM db_id=tmhmm from=303 to=325)
CARSLU_77_10
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9714..10196
DNA (483bp) protein (161aa)
Na(+) H(+) antiporter subunit E n=2 Tax=Staphylococcus lugdunensis RepID=D3QE46_STALH (db=UNIREF evalue=7.0e-85 bit_score=315.0 identity=100.0 coverage=98.7577639751553)
mnhE; Na+/H+ antiporter subunit
mnhE; Na+/H+ antiporter subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
CARSLU_77_11
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10193..10483
DNA (291bp) protein (97aa)
Na(+) H(+) antiporter subunit F
Na(+) H(+) antiporter subunit F n=2 Tax=Staphylococcus lugdunensis RepID=D3QE47_STALH (db=UNIREF evalue=7.0e-29 bit_score=129.0 identity=100.0 coverage=77.319587628866)
MrpF_PhaF (db=HMMPfam db_id=PF04066 from=30 to=84 evalue=1.7e-16 interpro_id=IPR007208 interpro_description=Multiple resistance and pH regulation protein F GO=Molecular Function: ion transmembrane transporter activity (GO:0015075), Cellular Component: integral to membrane (GO:0016021), Biological Process: ion transmembrane transport (GO:0034220))
Na(+)/H(+) antiporter subunit F1 {ECO:0000313|EMBL:EFU84681.1}; EC=1.6.99.5 {ECO:0000313|EMBL:EFU84681.1};; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="S
CARSLU_77_12
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10461..10817
DNA (357bp) protein (119aa)
mnhG; Na+/H+ antiporter subunit
Na(+) H(+) antiporter subunit G n=2 Tax=Staphylococcus lugdunensis RepID=D3QE48_STALH (db=UNIREF evalue=5.0e-52 bit_score=206.0 identity=99.15 coverage=98.3193277310924)
seg (db=Seg db_id=seg from=38 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
CARSLU_77_13
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10945..12114
DNA (1170bp) protein (390aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QE49_STALH (db=UNIREF evalue=0.0 bit_score=756.0 identity=98.69 coverage=97.6923076923077)
seg (db=Seg db_id=seg from=4 to=17)
CARSLU_77_14
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12146..12520)
DNA (375bp) protein (125aa)
ComA2 family protein n=2 Tax=Staphylococcus lugdunensis RepID=E6M8Q7_STALU (db=UNIREF evalue=5.0e-67 bit_score=256.0 identity=100.0 coverage=98.4)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=3 to=120 evalue=2.4e-36)
unchar_dom_1: uncharacterized domain (db=HMMTigr db_id=TIGR00369 from=3 to=120 evalue=5.0e-32 interpro_id=IPR003736 interpro_description=Phenylacetic acid degradation-related protein)
CARSLU_77_15
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13537..13878)
DNA (342bp) protein (114aa)
histidine permease YuiF
Histidine permease YuiF n=2 Tax=Staphylococcus lugdunensis RepID=D3QE51_STALH (db=UNIREF evalue=6.0e-26 bit_score=119.0 identity=100.0 coverage=53.5087719298246)
seg (db=Seg db_id=seg from=1 to=18)
seg (db=Seg db_id=seg from=80 to=89)
CARSLU_77_16
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14194..15297)
DNA (1104bp) protein (368aa)
Cytosol aminopeptidase PepA n=2 Tax=Staphylococcus lugdunensis RepID=D3QE52_STALH (db=UNIREF evalue=0.0 bit_score=728.0 identity=99.46 coverage=99.4565217391304)
cytosol aminopeptidase (EC:3.4.11.1)
cytosol aminopeptidase (EC:3.4.11.1)
seg (db=Seg db_id=seg from=242 to=253)
CARSLU_77_17
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16002..17210)
DNA (1209bp) protein (403aa)
NADH dehydrogenase n=2 Tax=Staphylococcus lugdunensis RepID=D3QE53_STALH (db=UNIREF evalue=0.0 bit_score=818.0 identity=99.5 coverage=99.5037220843672)
putative pyridine nucleotide-disulfide oxidoreductase
putative pyridine nucleotide-disulfide oxidoreductase
NADH DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR22915:SF4 from=3 to=387 evalue=3.9e-101)
CARSLU_77_18
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17494..18531)
DNA (1038bp) protein (346aa)
saccharopine dehydrogenase family protein
saccharopine dehydrogenase family protein
Saccharopine dehydrogenase n=2 Tax=Staphylococcus lugdunensis RepID=E6M8R1_STALU (db=UNIREF evalue=0.0 bit_score=687.0 identity=98.55 coverage=99.4219653179191)
seg (db=Seg db_id=seg from=5 to=15)
CARSLU_77_19
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18532..20265)
DNA (1734bp) protein (578aa)
ABC transporter ATP-binding protein rbh
ABC transporter ATP-binding protein rbh
ABC transporter ATP-binding protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QE55_STALH (db=UNIREF evalue=0.0 bit_score=1109.0 identity=99.65 coverage=99.6539792387543)
seg (db=Seg db_id=seg from=247 to=263)
CARSLU_77_20
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20290..22044)
DNA (1755bp) protein (585aa)
ABC transporter ATP-binding protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QE56_STALH (db=UNIREF evalue=0.0 bit_score=1168.0 identity=99.66 coverage=99.6581196581197)
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=44)
CARSLU_77_21
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22068..23387)
DNA (1320bp) protein (440aa)
Duplicated ATPase component of energizing module of predicted ECF transporter n=2 Tax=Staphylococcus lugdunensis RepID=D3QE57_STALH (db=UNIREF evalue=0.0 bit_score=907.0 identity=98.4 coverage=99.3181818181818)
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=341 to=355 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
CARSLU_77_22
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23471..24250)
DNA (780bp) protein (260aa)
putative cobalt uptake protein
putative cobalt uptake protein
Transmembrane component of energizing module of predicted ECF transporter n=1 Tax=Staphylococcus lugdunensis HKU09-01 RepID=D3QE58_STALH (db=UNIREF evalue=2.0e-108 bit_score=395.0 identity=100.0 coverage=89.2307692307692)
seg (db=Seg db_id=seg from=24 to=59)
CARSLU_77_23
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24247..24825)
DNA (579bp) protein (193aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QE59_STALH (db=UNIREF evalue=1.0e-103 bit_score=378.0 identity=99.48 coverage=98.9637305699482)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
CARSLU_77_24
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24842..27595)
DNA (2754bp) protein (918aa)
Iron aquisition yersiniabactin synthesis enzyme (Irp2) n=2 Tax=Staphylococcus lugdunensis RepID=D3QE60_STALH (db=UNIREF evalue=0.0 bit_score=1879.0 identity=99.35 coverage=99.7821350762527)
iron aquisition yersiniabactin synthesis enzyme (Irp2) rbh
iron aquisition yersiniabactin synthesis enzyme (Irp2) rbh
(db=HMMPfam db_id=PF00668 from=65 to=350 evalue=6.1e-37 interpro_id=IPR001242 interpro_description=Condensation domain)
CARSLU_77_25
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(27601..28293)
DNA (693bp) protein (231aa)
Putative uncharacterized protein n=1 Tax=Staphylococcus lugdunensis M23590 RepID=E6M8R8_STALU (db=UNIREF evalue=5.0e-134 bit_score=480.0 identity=99.57 coverage=99.1341991341991)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFU84521.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
Uncharacterized protein n=4 Tax=Staphylococcus lugdunensis RepID=K8N367_STALU
CARSLU_77_26
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28296..30404)
DNA (2109bp) protein (703aa)
Polyketide synthase n=2 Tax=Staphylococcus lugdunensis RepID=D3QE63_STALH (db=UNIREF evalue=0.0 bit_score=1429.0 identity=99.43 coverage=99.7155049786629)
methyltransferase family protein rbh
methyltransferase family protein rbh
seg (db=Seg db_id=seg from=529 to=537)
CARSLU_77_27
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30407..36457)
DNA (6051bp) protein (2017aa)
Equibactin nonribosomal peptide synthase protein n=2 Tax=Staphylococcus lugdunensis RepID=E6M8S0_STALU (db=UNIREF evalue=0.0 bit_score=4058.0 identity=98.76 coverage=99.4546355974219)
non-ribosomal peptide synthetase rbh
non-ribosomal peptide synthetase rbh
seg (db=Seg db_id=seg from=1557 to=1563)
CARSLU_77_28
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(36486..36773)
DNA (288bp) protein (96aa)
PchD-like protein
2,3-dihydroxybenzoate-AMP ligase n=2 Tax=Staphylococcus lugdunensis RepID=D3QE65_STALH (db=UNIREF evalue=2.0e-47 bit_score=191.0 identity=98.95 coverage=97.9166666666667)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=1 to=95 evalue=1.1e-21)
2,3-DIHYDROXYBENZOATE-AMP LIGASE (db=HMMPanther db_id=PTHR11968:SF24 from=2 to=95 evalue=3.9e-19)
CARSLU_77_29
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(38090..38788)
DNA (699bp) protein (233aa)
4'-phosphopantetheinyl transferase n=2 Tax=Staphylococcus lugdunensis RepID=D3QE66_STALH (db=UNIREF evalue=1.0e-127 bit_score=459.0 identity=100.0 coverage=94.4206008583691)
putative 4-phosphopentelyl transferase
putative 4-phosphopentelyl transferase
4'-phosphopantetheinyl transferase (db=superfamily db_id=SSF56214 from=25 to=132 evalue=2.1e-19 interpro_id=IPR008278 interpro_description=4'-phosphopantetheinyl transferase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: holo-[acyl-carrier-protein] synthase activity (GO:0008897), Biological Process: macromolecule biosynthetic process (GO:0009059))
CARSLU_77_30
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(38778..39491)
DNA (714bp) protein (238aa)
Iron aquisition yersiniabactin synthesis enzyme (YbtT,resembles thioesterases) n=2 Tax=Staphylococcus lugdunensis RepID=D3QE67_STALH (db=UNIREF evalue=7.0e-138 bit_score=493.0 identity=100.0 coverage=99.1596638655462)
putative non-ribosomal peptide synthesis thioesterase type II
putative non-ribosomal peptide synthesis thioesterase type II
THIOESTERASE (db=HMMPanther db_id=PTHR11487 from=10 to=237 evalue=1.7e-40 interpro_id=IPR012223 interpro_description=Thioesterase type II, NRPS/PKS/S-FAS GO=Biological Process: biosynthetic process (GO:0009058))
Displaying 30 items

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