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CARSEP3_8

Alias: CARSEP3_507

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARSEP3_8_1
Staphylococcus gallinarum, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(78..497)
DNA (420bp) protein (140aa)
hypothetical protein
seg (db=Seg db_id=seg from=112 to=131)
(db=HMMPfam db_id=PF08863 from=44 to=132 evalue=1.8e-23 interpro_id=IPR014962 interpro_description=YolD-like protein)
Strain DSM 20610 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIR11094.1}; TaxID=1293 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus gallina
CARSEP3_8_2
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(811..1656)
DNA (846bp) protein (282aa)
Beta-lactamase (EC:3.5.2.6)
Beta-lactamase (EC:3.5.2.6)
Beta-lactamase n=127 Tax=Bacilli RepID=BLAC_STAAU (db=UNIREF evalue=5.0e-121 bit_score=437.0 identity=92.17 coverage=99.290780141844)
seg (db=Seg db_id=seg from=126 to=149)
CARSEP3_8_3
Staphylococcus cohnii, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1763..3520
DNA (1758bp) protein (586aa)
regulatory protein blaR1 rbh
regulatory protein blaR1 rbh
Regulatory protein BlaR1 n=11 Tax=Staphylococcus RepID=Q5HN12_STAEQ (db=UNIREF evalue=0.0 bit_score=998.0 identity=100.0 coverage=99.6587030716723)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
CARSEP3_8_4
Staphylococcus gallinarum, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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3510..3890
DNA (381bp) protein (127aa)
Beta-lactamase regulator protein
Penicillinase repressor n=103 Tax=Bacilli RepID=BLAI_STAES (db=UNIREF evalue=9.0e-51 bit_score=202.0 identity=96.03 coverage=98.4251968503937)
seg (db=Seg db_id=seg from=104 to=116)
coiled-coil (db=Coil db_id=coil from=103 to=124 evalue=NA)
CARSEP3_8_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3942..4079)
DNA (138bp) protein (46aa)
hypothetical protein
Conserved domain protein n=7 Tax=Staphylococcus epidermidis RepID=Q5HN14_STAEQ (db=UNIREF evalue=5.0e-18 bit_score=93.6 identity=97.78 coverage=95.6521739130435)
Uncharacterized protein {ECO:0000313|EMBL:EFE58502.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
CARSEP3_8_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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4315..5343
DNA (1029bp) protein (343aa)
Uncharacterized protein SERP1457 n=10 Tax=Staphylococcus epidermidis RepID=Y1457_STAEQ (db=UNIREF evalue=0.0 bit_score=692.0 identity=99.12 coverage=99.4169096209913)
lactonase, 7-bladed beta-propeller family protein
(db=HMMPfam db_id=PF10282 from=4 to=341 evalue=8.5e-108 interpro_id=IPR019405 interpro_description=Lactonase, 7-bladed beta propeller)
no description (db=Gene3D db_id=G3DSA:2.130.10.10 from=1 to=342 evalue=7.5e-90 interpro_id=IPR015943 interpro_description=WD40/YVTN repeat-like-containing domain GO=Molecular Function: protein binding (GO:0005515))
CARSEP3_8_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5455..6834)
DNA (1380bp) protein (460aa)
Aldehyde dehydrogenase n=10 Tax=Staphylococcus epidermidis RepID=Q5HN16_STAEQ (db=UNIREF evalue=0.0 bit_score=925.0 identity=99.35 coverage=99.5652173913043)
acyl-CoA reductase family protein
coiled-coil (db=Coil db_id=coil from=23 to=51 evalue=NA)
ALDEHYDE_DEHYDR_CYS (db=PatternScan db_id=PS00070 from=237 to=248 evalue=0.0 interpro_id=IPR016160 interpro_description=Aldehyde dehydrogenase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
CARSEP3_8_8
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7134..8063)
DNA (930bp) protein (310aa)
Probable manganese-dependent inorganic pyrophosphatase n=10 Tax=Staphylococcus epidermidis RepID=PPAC_STAES (db=UNIREF evalue=1.0e-179 bit_score=632.0 identity=100.0 coverage=99.3548387096774)
putative manganese-dependent inorganic pyrophosphatase
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=1 to=307 evalue=5.5e-82)
no description (db=Gene3D db_id=G3DSA:3.90.1640.10 from=1 to=188 evalue=5.5e-61)
CARSEP3_8_9
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(8118..8672)
DNA (555bp) protein (185aa)
isochorismatase family protein
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=2 to=179 evalue=1.0e-46 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=1 to=184 evalue=3.0e-44 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
PYRAZINAMIDASE/NICOTINAMIDASE (db=HMMPanther db_id=PTHR11080 from=65 to=182 evalue=6.4e-38)
CARSEP3_8_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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8864..9961
DNA (1098bp) protein (366aa)
cell wall surface anchor family protein
cell wall surface anchor family protein
Parallel beta-helix repeat n=10 Tax=Staphylococcus epidermidis RepID=E6JQQ3_STAEP (db=UNIREF evalue=0.0 bit_score=709.0 identity=97.53 coverage=99.4535519125683)
seg (db=Seg db_id=seg from=55 to=66)
CARSEP3_8_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10412..11215)
DNA (804bp) protein (268aa)
Prephenate dehydratase # ACT domain (EC:4.2.1.51)
Prephenate dehydratase # ACT domain (EC:4.2.1.51)
Prephenate dehydratase n=9 Tax=Staphylococcus epidermidis RepID=Q5HN20_STAEQ (db=UNIREF evalue=5.0e-153 bit_score=543.0 identity=100.0 coverage=99.2537313432836)
PREPHENATE DEHYDRATASE (P PROTEIN) (db=HMMPanther db_id=PTHR21022 from=5 to=259 evalue=2.7e-52)
CARSEP3_8_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(11234..12301)
DNA (1068bp) protein (356aa)
Nitric oxide synthase oxygenase (EC:1.-.-.-)
Nitric oxide synthase oxygenase n=10 Tax=Staphylococcus epidermidis RepID=Q5HN21_STAEQ (db=UNIREF evalue=0.0 bit_score=744.0 identity=100.0 coverage=99.438202247191)
coiled-coil (db=Coil db_id=coil from=14 to=35 evalue=NA)
NOS (db=PatternScan db_id=PS60001 from=61 to=68 evalue=0.0 interpro_id=IPR004030 interpro_description=Nitric oxide synthase, oxygenase domain GO=Molecular Function: nitric-oxide synthase activity (GO:0004517), Biological Process: nitric oxide biosynthetic process (GO:0006809), Biological Process: oxidation-reduction process (GO:0055114))
CARSEP3_8_13

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12493..13962
DNA (1470bp) protein (490aa)
Nicotinate phosphoribosyltransferase n=10 Tax=Staphylococcus epidermidis RepID=Q8CRT3_STAES (db=UNIREF evalue=0.0 bit_score=1016.0 identity=100.0 coverage=99.5918367346939)
nicotinate phosphoribosyltransferase family protein
NAPRTase_put: putative nicotinate phosph (db=HMMTigr db_id=TIGR01513 from=10 to=466 evalue=2.8e-246 interpro_id=IPR006405 interpro_description=Nicotinate phosphoribosyltransferase putative GO=Molecular Function: nicotinate phosphoribosyltransferase activity (GO:0004516), Biological Process: nicotinate nucleotide salvage (GO:0019358))
Nicotinate phosphoribosyltransferase (db=HMMPIR db_id=PIRSF000484 from=2 to=479 evalue=4.7e-165 interpro_id=IPR007229 interpro_description=Nicotinate phosphoribosyltransferase-related GO=Molecular Function: nicotinate phosphoribosyltransferase activity (GO:0004516), Biological Process: pyridine nucleotide biosynthetic process (GO:0019363))
CARSEP3_8_14

Not on your lists

13955..14782
DNA (828bp) protein (276aa)
NH(3)-dependent NAD(+) synthetase n=9 Tax=Staphylococcus epidermidis RepID=NADE_STAEQ (db=UNIREF evalue=5.0e-160 bit_score=567.0 identity=100.0 coverage=99.2753623188406)
NAD synthetase (EC:6.3.1.5)
nadE: NAD+ synthetase (db=HMMTigr db_id=TIGR00552 from=19 to=272 evalue=3.3e-83 interpro_id=IPR003694 interpro_description=NAD synthase GO=Molecular Function: NAD+ synthase (glutamine-hydrolyzing) activity (GO:0003952), Molecular Function: ATP binding (GO:0005524), Biological Process: NAD biosynthetic process (GO:0009435))
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=3 to=273 evalue=1.5e-79 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
CARSEP3_8_15

Not on your lists

14856..15482
DNA (627bp) protein (209aa)
Integral membrane protein
UPF0316 protein SERP1448 n=15 Tax=Staphylococcus RepID=Y1448_STAEQ (db=UNIREF evalue=2.0e-110 bit_score=401.0 identity=100.0 coverage=99.0430622009569)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=83)
seg (db=Seg db_id=seg from=49 to=59)
CARSEP3_8_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15466..15645
DNA (180bp) protein (60aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE58513.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uncharacterized protein n=61 Tax=Staphylococcus RepID=Q8CRT5_STAES
CARSEP3_8_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16057..17352
DNA (1296bp) protein (432aa)
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=99 Tax=Staphylococcus RepID=PUR8_STAA8 (db=UNIREF evalue=0.0 bit_score=840.0 identity=92.11 coverage=99.537037037037)
coiled-coil (db=Coil db_id=coil from=42 to=66 evalue=NA)
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=261 to=270 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
CARSEP3_8_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17477..17779
DNA (303bp) protein (101aa)
His repressor
TrpR like protein, YerC/YecD n=105 Tax=Staphylococcus RepID=A5IU74_STAA9 (db=UNIREF evalue=2.0e-48 bit_score=194.0 identity=94.9 coverage=96.039603960396)
yecD_yerC: TrpR homolog YerC/YecD (db=HMMTigr db_id=TIGR02531 from=7 to=94 evalue=3.0e-54 interpro_id=IPR013368 interpro_description=TrpR homologue YerC/YecD)
(db=HMMPfam db_id=PF01371 from=9 to=94 evalue=6.5e-34 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CARSEP3_8_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18103..18795
DNA (693bp) protein (231aa)
Putative glycerol-1-phosphate prenyltransferase n=10 Tax=Staphylococcus epidermidis RepID=PCRB_STAEQ (db=UNIREF evalue=1.0e-131 bit_score=472.0 identity=100.0 coverage=99.1341991341991)
geranylgeranylglyceryl phosphate synthase-like protein
no description (db=Gene3D db_id=G3DSA:3.20.20.390 from=1 to=227 evalue=8.9e-83 interpro_id=IPR008205 interpro_description=Geranylgeranylglyceryl phosphate synthase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
GGGP-family: geranylgeranylglyceryl phosp (db=HMMTigr db_id=TIGR01768 from=8 to=224 evalue=3.4e-69 interpro_id=IPR008205 interpro_description=Geranylgeranylglyceryl phosphate synthase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
CARSEP3_8_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18792..20981
DNA (2190bp) protein (730aa)
ATP-dependent DNA helicase pcrA n=15 Tax=Staphylococcus RepID=PCRA_STAEQ (db=UNIREF evalue=0.0 bit_score=1514.0 identity=100.0 coverage=99.7260273972603)
ATP-dependent DNA helicase UvrD/PcrA
ATP-dependent DNA helicase UvrD/PcrA
pcrA: ATP-dependent DNA helicase PcrA (db=HMMTigr db_id=TIGR01073 from=4 to=724 evalue=0.0 interpro_id=IPR005751 interpro_description=DNA helicase, ATP-dependent, PcrA type GO=Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA unwinding involved in replication (GO:0006268))
CARSEP3_8_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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20985..22982
DNA (1998bp) protein (666aa)
DNA ligase n=10 Tax=Staphylococcus epidermidis RepID=DNLJ_STAEQ (db=UNIREF evalue=0.0 bit_score=1342.0 identity=99.85 coverage=99.6996996996997)
ligA; DNA ligase, NAD-dependent (EC:6.5.1.2)
ligA; DNA ligase, NAD-dependent (EC:6.5.1.2)
seg (db=Seg db_id=seg from=38 to=47)
CARSEP3_8_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23002..24210
DNA (1209bp) protein (403aa)
Putative pheromone cAM373 precursor lipoprotein CamS
Putative pheromone cAM373 precursor lipoprotein CamS
Staphylococcus epidermidis sex pheromone n=9 Tax=Staphylococcus epidermidis RepID=Q5HN31_STAEQ (db=UNIREF evalue=0.0 bit_score=766.0 identity=100.0 coverage=99.5037220843672)
seg (db=Seg db_id=seg from=7 to=15)
CARSEP3_8_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24538..26073)
DNA (1536bp) protein (512aa)
putP; proline permease
putP; proline permease
Sodium/proline symporter n=10 Tax=Staphylococcus epidermidis RepID=PUTP_STAEQ (db=UNIREF evalue=0.0 bit_score=860.0 identity=100.0 coverage=99.609375)
transmembrane_regions (db=TMHMM db_id=tmhmm from=322 to=344)
CARSEP3_8_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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26451..26753
DNA (303bp) protein (101aa)
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=100 Tax=Staphylococcus RepID=GATC_STAA1 (db=UNIREF evalue=9.0e-48 bit_score=192.0 identity=94.0 coverage=98.019801980198)
coiled-coil (db=Coil db_id=coil from=22 to=43 evalue=NA)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=4 to=96 evalue=2.4e-33 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
CARSEP3_8_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26755..28212
DNA (1458bp) protein (486aa)
Aspartyl-tRNA(Asn) amidotransferase subunit A @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.6)
Aspartyl-tRNA(Asn) amidotransferase subunit A @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Staphylococcus epidermidis M23864:W1 RepID=C5QLX7_STAEP (db=UNIREF evalue=0.0 bit_score=913.0 identity=94.43 coverage=99.5884773662551)
seg (db=Seg db_id=seg from=152 to=165)
CARSEP3_8_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28225..29652
DNA (1428bp) protein (476aa)
Aspartyl-tRNA(Asn) amidotransferase subunit B @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC:6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=104 Tax=Staphylococcus RepID=GATB_STAA1 (db=UNIREF evalue=0.0 bit_score=885.0 identity=92.84 coverage=99.5798319327731)
seg (db=Seg db_id=seg from=224 to=236)
GATB (db=PatternScan db_id=PS01234 from=141 to=155 evalue=0.0 interpro_id=IPR017958 interpro_description=Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO=Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884))
CARSEP3_8_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29877..30827
DNA (951bp) protein (317aa)
Diacylglycerol kinase n=13 Tax=Staphylococcus RepID=DAGK_STAEQ (db=UNIREF evalue=0.0 bit_score=639.0 identity=99.68 coverage=99.3690851735016)
lipid kinase
lipid kinase
TIGR00147: lipid kinase, YegS/Rv2252/BmrU f (db=HMMTigr db_id=TIGR00147 from=3 to=295 evalue=1.6e-113 interpro_id=IPR005218 interpro_description=Diacylglycerol/lipid kinase)
CARSEP3_8_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30859..32277
DNA (1419bp) protein (473aa)
RNA methyltransferase-like protein
RNA methyltransferase-like protein
Uncharacterized RNA methyltransferase SERP1435 n=9 Tax=Staphylococcus epidermidis RepID=Y1435_STAEQ (db=UNIREF evalue=0.0 bit_score=945.0 identity=99.56 coverage=96.1945031712474)
TRMA_2 (db=PatternScan db_id=PS01231 from=451 to=461 evalue=0.0 interpro_id=IPR010280 interpro_description=(Uracil-5)-methyltransferase GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
CARSEP3_8_29

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32421..32963
DNA (543bp) protein (181aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
CARSEP3_8_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33273..34343
DNA (1071bp) protein (357aa)
DNA polymerase IV n=10 Tax=Staphylococcus epidermidis RepID=DPO4_STAEQ (db=UNIREF evalue=0.0 bit_score=730.0 identity=99.72 coverage=99.4397759103641)
hypothetical protein
hypothetical protein
DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR11076 from=8 to=355 evalue=4.6e-133)
Displaying items 1-30 of 65 in total

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