ggKbase home page

CARCAL_32

Alias: CARCAL_12

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARCAL_32_1
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

1..678
DNA (678bp) protein (226aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHC90075.1}; TaxID=237561 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lod
Uncharacterized protein n=3 Tax=Candida RepID=B9W7E7_CANDC
CARCAL_32_2
unknown

Not on your lists

comp(2115..2228)
DNA (114bp) protein (38aa)
seg (db=Seg db_id=seg from=3 to=15)
seg (db=Seg db_id=seg from=20 to=37)
CARCAL_32_3
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

3832..7122
DNA (3291bp) protein (1097aa)
Putative uncharacterized protein n=3 Tax=Candida albicans RepID=C4YER2_CANAL (db=UNIREF evalue=0.0 bit_score=1867.0 identity=97.98 coverage=98.7237921604376)
MSB1; Putative role in polarity and bud formation (db=KEGG evalue=0.0 bit_score=1556.0 identity=99.36 coverage=71.285323609845)
seg (db=Seg db_id=seg from=784 to=845)
seg (db=Seg db_id=seg from=1041 to=1055)
CARCAL_32_4
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(7143..7622)
DNA (480bp) protein (160aa)
hypothetical protein (db=KEGG evalue=2.0e-70 bit_score=267.0 identity=100.0 coverage=98.75)
Putative uncharacterized protein n=2 Tax=Candida albicans RepID=Q59KB2_CANAL (db=UNIREF evalue=2.0e-70 bit_score=267.0 identity=100.0 coverage=98.75)
Uncharacterized protein {ECO:0000313|EMBL:EAK90919.1}; TaxID=237561 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lod
CARCAL_32_5
unknown

Not on your lists

8020..8112
DNA (93bp) protein (31aa)
8020..8112 + (rbs_motif=TATAA rbs_spacer=3bp)
CARCAL_32_6
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(8451..8642)
DNA (192bp) protein (64aa)
hypothetrical protein, Candida conserved (db=KEGG evalue=6.0e-23 bit_score=109.0 identity=95.24 coverage=96.875)
seg (db=Seg db_id=seg from=53 to=59)
Possible Golgi-localized spindle checkpoint protein n=1 Tax=Candida albicans (strain SC5314 / ATCC MYA-2876) RepID=Q59JN9_CANAL
Uncharacterized protein {ECO:0000313|EMBL:KGU33745.1}; TaxID=1094991 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lo
CARCAL_32_7
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(8663..9898)
DNA (1236bp) protein (412aa)
hypothetrical protein, Candida conserved (db=KEGG evalue=0.0 bit_score=724.0 identity=93.75 coverage=92.7184466019417)
Hypothetrical protein, Candida conserved (Mitotic spindle checkpoint protein, putative?) n=2 Tax=Candida RepID=B9W7E5_CANDC (db=UNIREF evalue=0.0 bit_score=724.0 identity=93.75 coverage=92.7184466019417)
seg (db=Seg db_id=seg from=344 to=355)
CARCAL_32_8
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(10245..13685)
DNA (3441bp) protein (1147aa)
Endo-1,3-beta-glucanase n=4 Tax=Candida albicans RepID=Q9UR03_CANAL (db=UNIREF evalue=0.0 bit_score=1489.0 identity=99.86 coverage=63.2083696599826)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=81 to=95)
CARCAL_32_9
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

15502..16587
DNA (1086bp) protein (362aa)
DAO1; D-amino acid oxidase (db=KEGG evalue=0.0 bit_score=691.0 identity=99.71 coverage=96.4088397790055)
Putative uncharacterized protein n=3 Tax=Candida RepID=C4YER5_CANAL (db=UNIREF evalue=0.0 bit_score=688.0 identity=99.14 coverage=96.4088397790055)
seg (db=Seg db_id=seg from=329 to=338)
CARCAL_32_10
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(16617..16856)
DNA (240bp) protein (80aa)
16617..16856 - (rbs_motif=AATAA rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:KHC40405.1}; TaxID=1094998 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lo
CARCAL_32_11
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists


17345..17851
DNA (507bp) protein (169aa)
MRPL27; similar to S. cerevisiae MRPL27 (YBR282W) mitochondrial ribosome large subunit protein (human MRP-L41) (db=KEGG evalue=2.0e-95 bit_score=350.0 identity=100.0 coverage=98.8165680473373)
60S ribosomal protein L27, mitochondrial, putative n=2 Tax=Candida RepID=B9W7E2_CANDC (db=UNIREF evalue=1.0e-90 bit_score=334.0 identity=94.64 coverage=98.8165680473373)
MRP-L27 (db=HMMPfam db_id=PF09809 from=35 to=131 evalue=8.19999999999997e-26 interpro_id=IPR019189 interpro_description=Ribosomal protein L27/L41, mitochondrial)
CARCAL_32_12
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

18071..18784
DNA (714bp) protein (238aa)
DPB3; DNA pol epsilon third subunit; K03506 DNA polymerase epsilon subunit 4 [EC:2.7.7.7] (db=KEGG evalue=5.0e-119 bit_score=430.0 identity=98.73 coverage=99.1596638655462)
Putative uncharacterized protein n=1 Tax=Candida albicans RepID=Q5AHY9_CANAL (db=UNIREF evalue=5.0e-119 bit_score=430.0 identity=98.73 coverage=99.1596638655462)
seg (db=Seg db_id=seg from=43 to=59)
CARCAL_32_13
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(18831..19298)
DNA (468bp) protein (156aa)
Potential mitochondrial protein Fmp47 n=2 Tax=Candida albicans RepID=Q5AHZ0_CANAL (db=UNIREF evalue=4.0e-84 bit_score=312.0 identity=97.42 coverage=98.7179487179487)
similar to S. cerevisiae FMP47 (YKL033W) mitochondrial protein (db=KEGG evalue=4.0e-84 bit_score=312.0 identity=97.42 coverage=98.7179487179487)
Uncharacterized protein {ECO:0000313|EMBL:KHC68531.1}; TaxID=1094994 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lo
CARCAL_32_14
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(19264..22491)
DNA (3228bp) protein (1076aa)
similar to S. cerevisiae FMP47 (YKL033W) mitochondrial protein (db=KEGG evalue=0.0 bit_score=1897.0 identity=98.96 coverage=98.1412639405204)
Potential mitochondrial protein Fmp47 n=2 Tax=Candida albicans RepID=Q5AHZ0_CANAL (db=UNIREF evalue=0.0 bit_score=1897.0 identity=98.96 coverage=98.1412639405204)
seg (db=Seg db_id=seg from=996 to=1003)
seg (db=Seg db_id=seg from=927 to=957)
CARCAL_32_15
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists


23158..23337
DNA (180bp) protein (60aa)
40S ribosomal protein S22; K02957 small subunit ribosomal protein S15Ae (db=KEGG evalue=1.0e-17 bit_score=92.0 identity=100.0 coverage=73.3333333333333)
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=2 to=45 evalue=1.2e-14 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.1370.30 from=1 to=45 evalue=2.2e-11)
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=2 to=45 evalue=1.4e-09 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
CARCAL_32_16
Candida tropicalis, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists


23565..23882
DNA (318bp) protein (106aa)
40S ribosomal protein S22 n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MET1_CANTT (db=UNIREF evalue=3.0e-46 bit_score=187.0 identity=93.75 coverage=88.6792452830189)
rps8p; 30S ribosomal protein S8P
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=75 to=92 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=17 to=105 evalue=7.5e-39 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
CARCAL_32_17
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

24187..24738
DNA (552bp) protein (184aa)
IMP1; Mitochondrial inner membrane protease (db=KEGG evalue=6.0e-106 bit_score=385.0 identity=100.0 coverage=98.9130434782609)
Mitochondrial inner membrane protease subunit 1, putative n=3 Tax=Candida RepID=B9W7D8_CANDC (db=UNIREF evalue=1.0e-104 bit_score=381.0 identity=98.36 coverage=98.9130434782609)
SPASE_I_1 (db=PatternScan db_id=PS00501 from=39 to=46 evalue=0.0 interpro_id=IPR019756 interpro_description=Peptidase S26A, signal peptidase I, serine active site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
CARCAL_32_18
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(24861..25688)
DNA (828bp) protein (276aa)
SWP1; oligosaccharyltransferase delta subunit; K12667 oligosaccharyltransferase complex subunit delta (ribophorin II) (db=KEGG evalue=2.0e-155 bit_score=551.0 identity=100.0 coverage=99.2753623188406)
Dolichyl-diphosphooligosaccharide-protein glycosyltransferase delta subunit, putative (Oligosaccharyl transferase delta subunit, putative) n=2 Tax=Candida RepID=B9W7D7_CANDC (db=UNIREF evalue=9.0e-148 bit_score=526.0 identity=93.82 coverage=99.2753623188406)
Ribophorin_II (db=HMMPfam db_id=PF05817 from=92 to=271 evalue=0.013 interpro_id=IPR008814 interpro_description=Ribophorin II GO=Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579), Cellular Component: endoplasmic reticulum membrane (GO:0005789), Cellular Component: oligosaccharyltransferase complex (GO:0008250), Biological Process: protein amino acid N-linked glycosylation via asparagine (GO:0018279))
CARCAL_32_19
unknown

Not on your lists

comp(26584..26727)
DNA (144bp) protein (48aa)
26584..26727 - (rbs_motif=AAAA rbs_spacer=4bp)
CARCAL_32_20
unknown

Not on your lists

comp(26828..27091)
DNA (264bp) protein (88aa)
26828..27091 - (rbs_motif=None rbs_spacer=None)
CARCAL_32_21
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

27517..28551
DNA (1035bp) protein (345aa)
Likely transcription factor TFIIB n=4 Tax=Candida RepID=Q5AHZ3_CANAL (db=UNIREF evalue=0.0 bit_score=708.0 identity=99.71 coverage=99.4202898550725)
transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB
transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB
TFIIB (db=PatternScan db_id=PS00782 from=163 to=178 evalue=0.0 interpro_id=IPR000812 interpro_description=Transcription factor TFIIB related GO=Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: transcription regulator activity (GO:0030528))
CARCAL_32_22
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

28937..30379
DNA (1443bp) protein (481aa)
Ubiquinone biosynthesis monooxygenase, putative n=2 Tax=Candida RepID=B9W7D5_CANDC (db=UNIREF evalue=0.0 bit_score=927.0 identity=96.04 coverage=99.5841995841996)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-)
seg (db=Seg db_id=seg from=22 to=34)
CARCAL_32_23
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

30715..31221
DNA (507bp) protein (169aa)
ILM1; Mitochondrial DNA maintainance (db=KEGG evalue=2.0e-90 bit_score=333.0 identity=99.4 coverage=98.2248520710059)
Putative uncharacterized protein n=3 Tax=Candida RepID=B9W7D4_CANDC (db=UNIREF evalue=2.0e-88 bit_score=327.0 identity=95.21 coverage=98.2248520710059)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=133)
CARCAL_32_24
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(31285..32901)
DNA (1617bp) protein (539aa)
Mediator of RNA polymerase II transcription subunit 17 n=3 Tax=Candida RepID=MED17_CANAL (db=UNIREF evalue=0.0 bit_score=942.0 identity=99.81 coverage=99.6289424860854)
RNA polymerase II mediator complex subunit, putative (db=KEGG evalue=0.0 bit_score=886.0 identity=93.87 coverage=99.6289424860854)
seg (db=Seg db_id=seg from=361 to=379)
CARCAL_32_25
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(33236..34681)
DNA (1446bp) protein (482aa)
RPN3; similar to S. cerevisiae RPN3 (YER021W) subunit of the 19S regulatory particle of the 26S proteasome; K03033 26S proteasome regulatory subunit N3 (db=KEGG evalue=0.0 bit_score=934.0 identity=99.38 coverage=99.5850622406639)
26S proteasome regulatory subunit, putative n=2 Tax=Candida RepID=B9W7D2_CANDC (db=UNIREF evalue=0.0 bit_score=898.0 identity=94.59 coverage=99.5850622406639)
seg (db=Seg db_id=seg from=357 to=370)
CARCAL_32_26
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

35590..36135
DNA (546bp) protein (182aa)
hypothetical protein (db=KEGG evalue=2.0e-93 bit_score=344.0 identity=99.41 coverage=92.3076923076923)
Putative uncharacterized protein n=3 Tax=Candida RepID=B9W7D1_CANDC (db=UNIREF evalue=6.0e-90 bit_score=332.0 identity=95.86 coverage=92.3076923076923)
DUF3237 (db=HMMPfam db_id=PF11578 from=15 to=178 evalue=2.2e-08)
CARCAL_32_27
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(36418..37041)
DNA (624bp) protein (208aa)
GTP-binding protein of the rab family n=8 Tax=Saccharomycetales RepID=A3LRF3_PICST (db=UNIREF evalue=3.0e-105 bit_score=384.0 identity=92.31 coverage=99.0384615384615)
small GTP-binding protein
RAB (db=ProfileScan db_id=PS51419 from=4 to=207 evalue=0.0 interpro_id=IPR020851 interpro_description=Small GTPase)
RAB (db=HMMSmart db_id=SM00175 from=9 to=172 evalue=7.49999605851445e-104 interpro_id=IPR003579 interpro_description=Ras small GTPase, Rab type GO=Molecular Function: GTP binding (GO:0005525), Biological Process: small GTPase mediated signal transduction (GO:0007264), Biological Process: protein transport (GO:0015031))
CARCAL_32_28
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(37598..38479)
DNA (882bp) protein (294aa)
similar to S. cerevisiae YJR116W (db=KEGG evalue=9.0e-161 bit_score=569.0 identity=99.66 coverage=99.3197278911565)
Putative uncharacterized protein n=3 Tax=Candida RepID=B9W7C9_CANDC (db=UNIREF evalue=2.0e-155 bit_score=551.0 identity=95.22 coverage=99.3197278911565)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=264)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=225)
CARCAL_32_29
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

39809..42685
DNA (2877bp) protein (959aa)
AGE1; potential ADP ribosylation factor GTPase activating protein (ARF GAP) similar to S. cerevisiae AGE1 (YDR524C) ARF GAP with a role in membrane traffic (db=KEGG evalue=0.0 bit_score=1911.0 identity=99.48 coverage=99.7914494264859)
ADP ribosylation factor, putative n=3 Tax=Candida RepID=B9W7C8_CANDC (db=UNIREF evalue=0.0 bit_score=1837.0 identity=95.1 coverage=99.7914494264859)
seg (db=Seg db_id=seg from=511 to=524)
CARCAL_32_30
Candida albicans, Candida, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

43015..44424
DNA (1410bp) protein (470aa)
Serine/threonine protein kinase, putative n=2 Tax=Candida RepID=B9W7C7_CANDC (db=UNIREF evalue=0.0 bit_score=815.0 identity=89.79 coverage=99.5744680851064)
serine/threonine protein kinase
serine/threonine protein kinase
seg (db=Seg db_id=seg from=15 to=29)
Displaying items 1-30 of 74 in total

View Taxonomy