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CARFMA_296

Alias: CARFMA_391

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARFMA_296_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..171
DNA (171bp) protein (57aa)
hypothetical protein
Hypothetical phage protein n=1 Tax=Clostridium botulinum A str. Hall RepID=A5I4F9_CLOBH (db=UNIREF evalue=5.0e-11 bit_score=70.1 identity=57.14 coverage=96.4912280701754)
Sipho_Gp157 (db=HMMPfam db_id=PF05565 from=1 to=56 evalue=3.3e-15 interpro_id=IPR008840 interpro_description=Siphovirus Gp157)
Hypothetical phage protein {ECO:0000313|EMBL:CAL83931.1}; TaxID=441771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Ha
CARFMA_296_2
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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450..818
DNA (369bp) protein (123aa)
putative phage protein
Uncharacterized protein {ECO:0000313|EMBL:EGY78658.1}; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 29
Putative uncharacterized protein n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D5J2_9FIRM
CARFMA_296_3
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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822..1421
DNA (600bp) protein (200aa)
seg (db=Seg db_id=seg from=172 to=183)
CARFMA_296_4
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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1434..2441
DNA (1008bp) protein (336aa)
Phage replication initiation
Predicted protein n=1 Tax=Enterococcus faecalis HIP11704 RepID=C7VM10_ENTFA (db=UNIREF evalue=3.0e-44 bit_score=182.0 identity=69.44 coverage=42.2619047619048)
seg (db=Seg db_id=seg from=5 to=13)
seg (db=Seg db_id=seg from=148 to=167)
CARFMA_296_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2444..3205
DNA (762bp) protein (254aa)
hypothetical protein
seg (db=Seg db_id=seg from=13 to=23)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=71 to=227 evalue=2.5e-16)
IstB (db=HMMPfam db_id=PF01695 from=96 to=215 evalue=1.6e-13 interpro_id=IPR002611 interpro_description=IstB-like ATP-binding protein GO=Molecular Function: ATP binding (GO:0005524))
CARFMA_296_6
Peptostreptococcaceae bacterium CM5, Clostridiales, Clostridia, Firmicutes, Bacteria

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3332..3688
DNA (357bp) protein (119aa)
endodeoxyribonuclease RusA
seg (db=Seg db_id=seg from=88 to=95)
RusA (db=HMMPfam db_id=PF05866 from=12 to=85 evalue=6.4e-05 interpro_id=IPR008822 interpro_description=Endodeoxyribonuclease, RusA-like GO=Molecular Function: magnesium ion binding (GO:0000287), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
endodeoxyribonuclease RusA n=1 Tax=Peptoniphilus rhinitidis 1-13 RepID=UPI0002886801
CARFMA_296_7
unknown

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3722..3919
DNA (198bp) protein (66aa)
3722..3919 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
CARFMA_296_8
unknown

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3903..4349
DNA (447bp) protein (149aa)
seg (db=Seg db_id=seg from=57 to=75)
CARFMA_296_9
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4700..5164
DNA (465bp) protein (155aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RH83_ANAPD (db=UNIREF evalue=2.0e-10 bit_score=68.2 identity=42.39 coverage=58.0645161290323)
Uncharacterized protein {ECO:0000313|EMBL:EFL54698.1}; TaxID=866773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna BVS033A4.;"
CARFMA_296_10
unknown

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5154..5327
DNA (174bp) protein (58aa)
5154..5327 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
CARFMA_296_11
unknown

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5330..5437
DNA (108bp) protein (36aa)
5330..5437 + (rbs_motif=AGxAGG/AGGxGG rbs_spacer=5-10bp)
CARFMA_296_12
unknown

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5398..5574
DNA (177bp) protein (59aa)
5398..5574 + (rbs_motif=None rbs_spacer=None)
CARFMA_296_13
Anaerococcus tetradius, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5571..5759
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Anaerococcus tetradius ATCC 35098 RepID=C2CFZ3_9FIRM (db=UNIREF evalue=2.0e-08 bit_score=61.2 identity=55.17 coverage=82.5396825396825)
CARFMA_296_14
unknown

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5756..5851
DNA (96bp) protein (32aa)
5756..5851 + (rbs_motif=AGxAGG/AGGxGG rbs_spacer=5-10bp)
CARFMA_296_15
unknown

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5957..6055
DNA (99bp) protein (33aa)
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
Displaying 15 items

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