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13_1_40cm_3_scaffold_10293

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_10293_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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2..301
DNA (300bp) protein (100aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
DNA polymerase LigD, polymerase domain protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0A8_THEOJ
ATP-dependent DNA ligase
13_1_40cm_3_scaffold_10293_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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298..849
DNA (552bp) protein (184aa)
hypothetical protein; K07020 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Alpha/beta hydrolase superfamily enzyme, predicted hydrolase id=4413390 bin=GWC2_Chloroflexi_73_18 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
alpha/beta hydrolase
13_1_40cm_3_scaffold_10293_3
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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939..1301
DNA (363bp) protein (121aa)
transmembrane_regions 9..31 Tax=RBG_16_Chloroflexi_63_12_curated
13_1_40cm_3_scaffold_10293_4
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

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1375..2061
DNA (687bp) protein (229aa)
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQV1_9BACT id=1247317 bin=RBG9 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
winged helix family two component transcriptional regulator Tax=RBG_16_RIF_CHLX_69_14_curated
winged helix family two component transcriptional regulator
13_1_40cm_3_scaffold_10293_5
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

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2058..3176
DNA (1119bp) protein (373aa)
histidine kinase (EC:2.7.13.3); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
histidine kinase (EC:2.7.13.3); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] id=1247318 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
13_1_40cm_3_scaffold_10293_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3223..4725)
DNA (1503bp) protein (501aa)
aldehyde Dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Aldehyde Dehydrogenase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1X5_SPHTD rbh
aldehyde Dehydrogenase rbh
13_1_40cm_3_scaffold_10293_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(4837..4959)
DNA (123bp) protein (41aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_3_scaffold_10293_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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5097..6029
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI00036191FB
Ku protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source
13_1_40cm_3_scaffold_10293_9
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(6182..7453)
DNA (1272bp) protein (424aa)
hypothetical protein Tax=GWC2_RIF_CHLX_73_18_curated
Conserved domain protein id=4195223 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_3_scaffold_10293_10
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

7736..9484
DNA (1749bp) protein (583aa)
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
13_1_40cm_3_scaffold_10293_11
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

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comp(9835..10689)
DNA (855bp) protein (285aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=648996 species="Ba
Formyltetrahydrofolate deformylase n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T6K9_THEA1
formyltetrahydrofolate deformylase
13_1_40cm_3_scaffold_10293_trna_1
unknown

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comp(10759..10831)
DNA (73bp)
transferRNA
Displaying 12 items

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