ggKbase home page

SCNpilot_cont_500_bf_scaffold_1263

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1263_1
unknown

Not on your lists

2..76
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1263_2
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


160..468
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=RS10_ROSCS
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_cont_500_bf_scaffold_1263_3
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists


659..1324
DNA (666bp) protein (222aa)
50S ribosomal protein L3 n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EC72_9CHLR
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_cont_500_bf_scaffold_1263_4
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists


1342..2034
DNA (693bp) protein (231aa)
50S ribosomal protein L4 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFC7_THET1
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_cont_500_bf_scaffold_1263_5
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


2055..2339
DNA (285bp) protein (95aa)
50S ribosomal protein L23 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RL23_ROSS1
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
50S ribosomal protein L23 {ECO:0000255|HAMAP-Rule:MF_01369}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SCNpilot_cont_500_bf_scaffold_1263_6
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


2361..3188
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RL2_ROSS1 rbh
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 rbh
50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SCNpilot_cont_500_bf_scaffold_1263_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3266..3547
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=1 Tax=[Clostridium] glycolicum RepID=UPI0003782764
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_cont_500_bf_scaffold_1263_8
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3599..3943
DNA (345bp) protein (115aa)
50S ribosomal protein L22 n=1 Tax=Dehalobacter RepID=UPI000314AC75
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_cont_500_bf_scaffold_1263_9
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


3943..4626
DNA (684bp) protein (228aa)
30S ribosomal protein S3 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RS3_ROSS1 rbh
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_cont_500_bf_scaffold_1263_10
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4642..5241
DNA (600bp) protein (200aa)
50S ribosomal protein L16 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWL1_9CLOT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
ribosomal protein L16
SCNpilot_cont_500_bf_scaffold_1263_11
Parvimonas micra, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5248..5481
DNA (234bp) protein (78aa)
50S ribosomal protein L29 n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNC7_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=411465 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas micra ATCC 33270.;"
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
SCNpilot_cont_500_bf_scaffold_1263_12
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


5535..5861
DNA (327bp) protein (109aa)
30S ribosomal protein S17 n=1 Tax=Nesterenkonia alba RepID=UPI0003B7BBC0
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_cont_500_bf_scaffold_1263_13
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


5858..6226
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=RL14_CHLAD
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
SCNpilot_cont_500_bf_scaffold_1263_14
Adlercreutzia equolifaciens, Adlercreutzia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


6262..6627
DNA (366bp) protein (122aa)
50S ribosomal protein L24 n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6C681_9ACTN
50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1384484 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia.;" source="Adlercreutzia equolifaciens DSM 19450.;"
SCNpilot_cont_500_bf_scaffold_1263_15
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7001..7492
DNA (492bp) protein (164aa)
50S ribosomal protein L5 n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CJL1_SYNLT
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
SCNpilot_cont_500_bf_scaffold_1263_16
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


7549..7734
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=2 Tax=Chloroflexus RepID=RS14Z_CHLAA
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
30S ribosomal protein S14 type Z {ECO:0000255|HAMAP-Rule:MF_01364}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
SCNpilot_cont_500_bf_scaffold_1263_17
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists


7752..8165
DNA (414bp) protein (138aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=14629536 bin=bin8_Chloro species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
Tax=CSP1_4_Chloroflexi
SCNpilot_cont_500_bf_scaffold_1263_18
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists


8189..8740
DNA (552bp) protein (184aa)
50S ribosomal protein L6 n=1 Tax=Desulfurispora thermophila RepID=UPI00037840C5
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
Tax=RBG_16_RIF_CHLX_69_14_curated
SCNpilot_cont_500_bf_scaffold_1263_19
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists


8827..9198
DNA (372bp) protein (124aa)
50S ribosomal protein L18 n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=RL18_THERP
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
SCNpilot_cont_500_bf_scaffold_1263_20
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists


9215..10138
DNA (924bp) protein (308aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=14629533 bin=bin8_Chloro species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
Tax=CSP1_4_Chloroflexi
SCNpilot_cont_500_bf_scaffold_1263_21

Not on your lists


10152..10364
DNA (213bp) protein (71aa)
50S ribosomal protein L30 n=1 Tax=Streptomyces vitaminophilus RepID=UPI00037E4E5C
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000313|EMBL:KGA13064.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
SCNpilot_cont_500_bf_scaffold_1263_22
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists


10528..11103
DNA (576bp) protein (192aa)
50S ribosomal protein L15 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFE5_THET1
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_cont_500_bf_scaffold_1263_23
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists


11298..12668
DNA (1371bp) protein (457aa)
Protein translocase subunit SecY n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFE6_THET1 rbh
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; Flags: Precursor;; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_cont_500_bf_scaffold_1263_24
unknown

Not on your lists

12856..13560
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1263_25
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

13924..14634
DNA (711bp) protein (237aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THC3_9CHLR id=1242009 bin=RBG2 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Tax=CG_Dehalo_02
SCNpilot_cont_500_bf_scaffold_1263_26
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

14812..15558
DNA (747bp) protein (249aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R7X5_THETN
Tax=S_Thermoanaerobacterales_50_218
SCNpilot_cont_500_bf_scaffold_1263_27
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

15949..16062
DNA (114bp) protein (38aa)
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 id=4362182 bin=GWC2_Chloroflexi_73_18 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_Chloroflexi_57_8_curated
SCNpilot_cont_500_bf_scaffold_1263_28
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists


16092..16472
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Nodosilinea nodulosa RepID=UPI0003753B5C
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
SCNpilot_cont_500_bf_scaffold_1263_29
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists


16508..16912
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THB9_9CHLR
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_cont_500_bf_scaffold_1263_30
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists


17282..17854
DNA (573bp) protein (191aa)
30S ribosomal protein S4 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2N2_SPHTD
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
Displaying items 1-30 of 40 in total

View Taxonomy