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B_1_S1_Biohub_coassembly_k141_1459987

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_1459987_1
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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418..2826
DNA (2409bp) protein (803aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3C25F
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_1459987_2
RHI_OP11_Curtissbacteria_38_9b, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

comp(3455..4354)
DNA (900bp) protein (300aa)
modification methylase (EC:2.1.1.-)
Uncharacterized protein Tax=Helicobacter macacae MIT 99-5501 RepID=V8C6K5_9HELI
Tax=RIFCSPHIGHO2_12_FULL_OP11_Curtissbacteria_38_9b_curated
B_1_S1_Biohub_coassembly_k141_1459987_3
GWD2_OD1_42_14, Parcubacteria, Bacteria

Not on your lists

comp(4386..5615)
DNA (1230bp) protein (410aa)
Modification methylase MvaI {ECO:0000313|EMBL:KKS37553.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_42_14.;"
PspGI methylase bin=GWC2_Elusimicrobia_51_8 species=Pyrococcus sp. GI-H genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
DNA methylase N-4/N-6 domain-containing protein
B_1_S1_Biohub_coassembly_k141_1459987_4

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comp(5627..5845)
DNA (219bp) protein (73aa)
Marine sediment metagenome DNA, contig: S12H4_L00150 {ECO:0000313|EMBL:GAI86513.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_1459987_5

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comp(5899..6510)
DNA (612bp) protein (204aa)
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S03H2_C00981 {ECO:0000313|EMBL:GAH27546.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase
B_1_S1_Biohub_coassembly_k141_1459987_6
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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comp(6537..7802)
DNA (1266bp) protein (422aa)
GTPase Obg Tax=Dehalococcoides sp. (strain VS) RepID=D2BJX1_DEHSV
GTP-binding protein, GTP1/OBG family
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_1459987_7
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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comp(7979..9220)
DNA (1242bp) protein (414aa)
Chromosomal replication initiator protein DnaA Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K322_DEHLB
chromosomal replication initiator protein DnaA
Tax=RBG_13_Chloroflexi_46_14_curated
B_1_S1_Biohub_coassembly_k141_1459987_8
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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9596..10534
DNA (939bp) protein (313aa)
Methionyl-tRNA formyltransferase Tax=sulfur-oxidizing symbionts RepID=G2DF76_9GAMM bin=RBG2 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG2 organism_group=Chloroflexi
methionyl-tRNA formyltransferase
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_1459987_9

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10652..11431
DNA (780bp) protein (260aa)
Nucleoside triphosphate pyrophosphohydrolase MazG Tax=Dehalococcoides mccartyi BTF08 RepID=M1QV88_9CHLR
Marine sediment metagenome DNA, contig: S12H4_S09060 {ECO:0000313|EMBL:GAI95819.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
MazG family protein
B_1_S1_Biohub_coassembly_k141_1459987_10
unknown

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comp(11961..12188)
DNA (228bp) protein (76aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_11
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(12282..14354)
DNA (2073bp) protein (691aa)
Small GTP-binding protein Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K0Z6_DEHLB
small GTP-binding protein
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1459987_12

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comp(14443..15000)
DNA (558bp) protein (186aa)
Putative membrane protein Tax=Dehalococcoides mccartyi GY50 RepID=V5QBV2_9CHLR
Marine sediment metagenome DNA, contig: S12H4_L00932 {ECO:0000313|EMBL:GAI82400.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_1459987_13
unknown

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comp(15109..15396)
DNA (288bp) protein (96aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_14
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(15423..16355)
DNA (933bp) protein (311aa)
Site-specific recombinase, phage integrase family Tax=Dehalococcoides mccartyi GY50 RepID=V5QBX3_9CHLR
site-specific recombinase, phage integrase family
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1459987_15
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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comp(16559..18076)
DNA (1518bp) protein (506aa)
putative with similarity to BchE, but NOT Mg-protoporphyrin monomethyl ester cyclase (anaerobic) bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
radical SAM domain-containing protein
Tax=RBG_13_Chloroflexi_46_14_curated
B_1_S1_Biohub_coassembly_k141_1459987_trna_1
unknown

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18207..18278
DNA (72bp)
transferRNA Met
B_1_S1_Biohub_coassembly_k141_1459987_16

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comp(18260..19858)
DNA (1599bp) protein (533aa)
Resolvase domain protein Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z6A0_DEHE1
serine recombinase
Marine sediment metagenome DNA, contig: S01H4_C01061 {ECO:0000313|EMBL:GAG61458.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_1459987_17
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19879..20745)
DNA (867bp) protein (289aa)
Helix-turn-helix type-3-like protein Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIY8_THEPS
helix-turn-helix type-3-like protein
Helix-turn-helix type-3-like protein {ECO:0000313|EMBL:AFV12032.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
B_1_S1_Biohub_coassembly_k141_1459987_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20738..21097)
DNA (360bp) protein (120aa)
Helix-turn-helix motif protein Tax=Nitrobacter sp. Nb-311A RepID=A3X0C5_9BRAD
Helix-turn-helix motif protein {ECO:0000313|EMBL:EAQ34315.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
transcriptional regulator
B_1_S1_Biohub_coassembly_k141_1459987_19
unknown

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21227..21505
DNA (279bp) protein (93aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_20
unknown

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21508..21729
DNA (222bp) protein (74aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_21
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

21722..24025
DNA (2304bp) protein (768aa)
Putative uncharacterized protein Tax=Dehalococcoides sp. (strain GT) RepID=D3SH22_DEHSG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII57387.1}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi CG1.;"
B_1_S1_Biohub_coassembly_k141_1459987_22
unknown

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24230..25051
DNA (822bp) protein (274aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_23
unknown

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25054..26124
DNA (1071bp) protein (357aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_24
unknown

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26126..26416
DNA (291bp) protein (97aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_25
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

26413..26985
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Dehalococcoides mccartyi GY50 RepID=V5QB32_9CHLR
hypothetical protein
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1459987_26

Not on your lists

27272..27772
DNA (501bp) protein (167aa)
Marine sediment metagenome DNA, contig: S06H3_S02724 {ECO:0000313|EMBL:GAI21137.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_1459987_27

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27850..28509
DNA (660bp) protein (220aa)
Marine sediment metagenome DNA, contig: S12H4_S01751 {ECO:0000313|EMBL:GAJ02044.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_1459987_28
unknown

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28677..28967
DNA (291bp) protein (97aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1459987_29

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29110..29769
DNA (660bp) protein (220aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4EL26_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKN86984.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying items 1-30 of 52 in total

View Taxonomy