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B_1_S1_Biohub_coassembly_k141_3013974

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_3013974_1
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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285..1541
DNA (1257bp) protein (419aa)
Polynucleotide adenylyltransferase region Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3A5_DEHLB
polynucleotide adenylyltransferase-domain containing protein
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_3013974_2
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

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1649..3178
DNA (1530bp) protein (510aa)
Uncharacterized protein Tax=Dehalococcoides mccartyi GY50 RepID=V5QAB4_9CHLR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII57658.1}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi CG1.;"
B_1_S1_Biohub_coassembly_k141_3013974_3
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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3322..4584
DNA (1263bp) protein (421aa)
dev:DhcVS_454 ahcY; S-adenosylhomocysteine hydrolase; K01251 adenosylhomocysteinase [EC:3.3.1.1] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
ahcY; adenosylhomocysteinase (EC:3.3.1.1)
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_3013974_4
unknown

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4591..4821
DNA (231bp) protein (77aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3013974_5
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

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4818..6032
DNA (1215bp) protein (405aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase Tax=Dehalococcoides ethenogenes (strain 195) RepID=METK_DEHE1
Tax=RBG_13_Chloroflexi_51_18_curated
B_1_S1_Biohub_coassembly_k141_3013974_6
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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6240..6770
DNA (531bp) protein (177aa)
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_3013974_7
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

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6974..8404
DNA (1431bp) protein (477aa)
deh:cbdb_A474 cbdbA474; phosphoglucomutase; K01840 phosphomannomutase [EC:5.4.2.8] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
phosphoglucomutase/phosphomannomutase
Tax=RBG_13_Chloroflexi_51_18_curated
B_1_S1_Biohub_coassembly_k141_3013974_8

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8411..8764
DNA (354bp) protein (118aa)
Marine sediment metagenome DNA, contig: S03H2_S09522 {ECO:0000313|EMBL:GAH72539.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Mannose-1-phosphate guanylyltransferase/ Phosphomannomutase bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
cupin domain-containing protein
B_1_S1_Biohub_coassembly_k141_3013974_9
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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8870..9556
DNA (687bp) protein (229aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K311_DEHLB
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_3013974_10
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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9546..10046
DNA (501bp) protein (167aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Thermovibrio ammonificans HB-1 RepID=E8T604_THEA1 bin=RBG2 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG2 organism_group=Chloroflexi
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_3013974_11
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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10067..11443
DNA (1377bp) protein (459aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteinyl-tRNA synthetase Tax=Dehalococcoides mccartyi GY50 RepID=V5Q9C3_9CHLR
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_3013974_12
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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11572..12084
DNA (513bp) protein (171aa)
Putative uncharacterized protein Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R821_AMMDK
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP66433.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3013974_13
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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12038..13621
DNA (1584bp) protein (528aa)
Putative uncharacterized protein Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R820_AMMDK
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP66434.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3013974_14

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comp(13652..15193)
DNA (1542bp) protein (514aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LGJ7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN01722.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
1,4-dihydroxy-2-naphthoateoctaprenyltransferase
B_1_S1_Biohub_coassembly_k141_3013974_15

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comp(15214..15339)
DNA (126bp) protein (42aa)
Marine sediment metagenome DNA, contig: S06H3_L04558 {ECO:0000313|EMBL:GAI10521.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
B_1_S1_Biohub_coassembly_k141_3013974_16
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(15320..16177)
DNA (858bp) protein (286aa)
hypothetical protein; K09134 hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_3013974_trna_4
unknown

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comp(16669..16742)
DNA (74bp)
transferRNA Ile
B_1_S1_Biohub_coassembly_k141_3013974_17

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16908..18035
DNA (1128bp) protein (376aa)
Poly-gamma-glutamate synthesis protein / capsule biosynthesis protein capA Tax=Nitrosospira sp. APG3 RepID=M5DFQ2_9PROT
Marine sediment metagenome DNA, contig: S01H1_L00088 {ECO:0000313|EMBL:GAF78144.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
B_1_S1_Biohub_coassembly_k141_3013974_18
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists


18255..20708
DNA (2454bp) protein (818aa)
Leucyl-tRNA synthetase Tax=Dehalococcoides mccartyi GY50 RepID=V5Q9U3_9CHLR
leucyl-tRNA synthetase
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_3013974_19

Not on your lists

20923..21705
DNA (783bp) protein (261aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1G2_DEHLB
Marine sediment metagenome DNA, contig: S06H3_C00529 {ECO:0000313|EMBL:GAH99515.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_3013974_20

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21702..21944
DNA (243bp) protein (81aa)
Marine sediment metagenome DNA, contig: S12H4_L01846 {ECO:0000313|EMBL:GAI76774.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein; K02221 YggT family protein bin=PER_GWE2_39_6 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWE2_39_6 organism_group=PER (Peregrinibacteria)
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3013974_21
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(22135..23709)
DNA (1575bp) protein (525aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z8V8_DEHE1
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_3013974_22

Not on your lists

comp(23729..24838)
DNA (1110bp) protein (370aa)
Marine sediment metagenome DNA, contig: S06H3_C00570 {ECO:0000313|EMBL:GAI00029.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
deg:DehalGT_0537 aminotransferase class V bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
class V aminotransferase
B_1_S1_Biohub_coassembly_k141_3013974_23
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(25097..26299)
DNA (1203bp) protein (401aa)
tyrosine--tRNA ligase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi BTF08.;"
Tyrosine--tRNA ligase Tax=Dehalococcoides mccartyi BTF08 RepID=M1Q3U0_9CHLR
B_1_S1_Biohub_coassembly_k141_3013974_24
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

Not on your lists

comp(26302..27258)
DNA (957bp) protein (319aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
riboflavin biosynthesis protein RibF
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_3013974_trna_1
unknown

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27483..27554
DNA (72bp)
transferRNA Thr
B_1_S1_Biohub_coassembly_k141_3013974_25
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(27598..28248)
DNA (651bp) protein (217aa)
Two component transcriptional regulator, LuxR family Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y6C7_THEBD
LuxR family two component transcriptional regulator
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_3013974_26
unknown

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comp(28282..28473)
DNA (192bp) protein (64aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3013974_27
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(28875..29345)
DNA (471bp) protein (157aa)
Rubrerythrin bin=GWC2_ACD39_50_8 species=Methanospirillum hungatei genus=Methanospirillum taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_ACD39_50_8 organism_group=ACD39
cytoplasmic protein
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_3013974_28
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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comp(29360..30235)
DNA (876bp) protein (292aa)
dly:Dehly_0332 pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta (EC:1.2.7.3); K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
2-oxoglutarate ferredoxin oxidoreductase subunit beta
Tax=RBG_16_Chloroflexi_50_9_curated
Displaying items 1-30 of 60 in total

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