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B_1_S1_Biohub_coassembly_k141_1551184

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_1551184_1
unknown

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111..248
-----------------
DNA (138bp)
protein (46aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1551184_2
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

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comp(549..815)
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein Tax=Dehalococcoides mccartyi RepID=M1PY60_9CHLR
hypothetical protein
Tax=RBG_16_Chloroflexi_58_8_curated
B_1_S1_Biohub_coassembly_k141_1551184_3
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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comp(1061..1987)
-----------------
DNA (927bp)
protein (309aa)
Pseudouridine synthase Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z6R3_DEHE1
RNA pseudouridine synthase
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_1551184_4
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(2068..2589)
-----------------
DNA (522bp)
protein (174aa)
lspA; signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L029_THERP
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1551184_5
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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comp(2556..2909)
-----------------
DNA (354bp)
protein (118aa)
TraR/DksA family transcriptional regulator bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
molecular chaperone DnaK
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_1551184_6

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3174..3473
-----------------
DNA (300bp)
protein (100aa)
Putative uncharacterized protein Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8P4_AMMDK
Marine sediment metagenome DNA, contig: S01H1_S06591 {ECO:0000313|EMBL:GAG02759.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_1551184_7
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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3532..4257
-----------------
DNA (726bp)
protein (242aa)
Zinc/iron permease Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8JZL3_DEHLB
zinc/iron permease
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_1551184_8

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4322..5245
-----------------
DNA (924bp)
protein (308aa)
deg:DehalGT_1090 dihydroorotate dehydrogenase family protein; K00226 dihydroorotate oxidase [EC:1.3.3.1] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S06H3_C01084 {ECO:0000313|EMBL:GAH91743.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
diguanylate cyclase
B_1_S1_Biohub_coassembly_k141_1551184_9

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comp(5307..6401)
-----------------
DNA (1095bp)
protein (365aa)
Nucleotidyltransferase family protein Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z778_DEHE1
Marine sediment metagenome DNA, contig: S03H2_C02164 {ECO:0000313|EMBL:GAH24779.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nucleotidyltransferase
B_1_S1_Biohub_coassembly_k141_1551184_10
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

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comp(6444..7178)
-----------------
DNA (735bp)
protein (245aa)
ABC transporter, permease protein Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z8A7_DEHE1
ABC transporter permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi CG4.;"
B_1_S1_Biohub_coassembly_k141_1551184_11
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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comp(7175..7918)
-----------------
DNA (744bp)
protein (248aa)
ABC transporter, ATP-binding protein Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z8A8_DEHE1
ABC transporter ATP-binding protein
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_1551184_12
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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8110..9363
-----------------
DNA (1254bp)
protein (418aa)
Permease of the major facilitator superfamily Tax=Dehalococcoides sp. (strain VS) RepID=D2BHP6_DEHSV
permease of the major facilitator superfamily
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_1551184_13
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(9329..9739)
-----------------
DNA (411bp)
protein (137aa)
Ribonuclease H Tax=Dehalococcoides sp. (strain GT) RepID=D3SHL5_DEHSG
ribonuclease H
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1551184_14
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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comp(9742..10437)
-----------------
DNA (696bp)
protein (232aa)
Putative uncharacterized protein Tax=Dehalococcoides sp. (strain BAV1) RepID=A5FSA1_DEHSB
hypothetical protein
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_1551184_trna_1
unknown

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10539..10620
-----------------
DNA (82bp)
transferRNA Leu
B_1_S1_Biohub_coassembly_k141_1551184_15

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comp(11054..12292)
-----------------
DNA (1239bp)
protein (413aa)
ATP-binding protein, DnaC family Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z917_DEHE1
Marine sediment metagenome DNA, contig: S12H4_C00225 {ECO:0000313|EMBL:GAI61269.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ATP-binding protein
B_1_S1_Biohub_coassembly_k141_1551184_16
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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comp(12390..13106)
-----------------
DNA (717bp)
protein (239aa)
DNA replication protein, subunit DnaD Tax=Dehalococcoides mccartyi RepID=M1QV10_9CHLR
dnaD; DNA replication protein, subunit DnaD
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_1551184_17
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(13103..14038)
-----------------
DNA (936bp)
protein (312aa)
Primary replicative DNA helicase Tax=Dehalococcoides mccartyi RepID=A5FRS9_DEHSB
replicative DNA helicase
Tax=RBG_16_Chloroflexi_51_9_curated
Displaying 18 items

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