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B_1_S1_Biohub_coassembly_k141_2694881

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Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_2694881_1
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

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2..736
-----------------
DNA (735bp)
protein (245aa)
PKD Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LLT1_METBM
beta-Ig-H3/fasciclin
Tax=RBG_16_Chloroflexi_56_11_curated
B_1_S1_Biohub_coassembly_k141_2694881_2
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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893..1345
-----------------
DNA (453bp)
protein (151aa)
exaA; Quinoprotein ethanol dehydrogenase (EC:1.1.2.8)
Quinoprotein ethanol dehydrogenase {ECO:0000313|EMBL:CCJ37180.1}; EC=1.1.2.8 {ECO:0000313|EMBL:CCJ37180.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 /; MS2) (Methanogenium bourgense).;"
Quinoprotein ethanol dehydrogenase Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7L104_METBM
B_1_S1_Biohub_coassembly_k141_2694881_3
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

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1376..1861
-----------------
DNA (486bp)
protein (162aa)
Carbohydrate binding family 6 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GFJ4_METPE
carbohydrate binding family 6
Tax=RBG_13_Chloroflexi_54_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_4
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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1862..2575
-----------------
DNA (714bp)
protein (238aa)
Oxidoreductase FAD/NAD(P)-binding domain protein Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K0R1_DEHLB
oxidoreductase FAD/NAD(P)-binding domain-containing protein
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_2694881_5
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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2763..3602
-----------------
DNA (840bp)
protein (280aa)
permease Tax=Brachybacterium squillarum RepID=UPI000262A3EF
hypothetical protein
Tax=RBG_13_WOR_2_41_10_curated
B_1_S1_Biohub_coassembly_k141_2694881_6

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3636..4355
-----------------
DNA (720bp)
protein (240aa)
cysH; phosophoadenylyl-sulfate reductase (EC:1.8.4.8)
Uncharacterized protein {ECO:0000313|EMBL:KKL50099.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Phosphoadenosine phosphosulfate reductase bin=GWF2_OP3_43_52 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
B_1_S1_Biohub_coassembly_k141_2694881_7
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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4437..4826
-----------------
DNA (390bp)
protein (130aa)
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_8
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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4942..6039
-----------------
DNA (1098bp)
protein (366aa)
GTP-binding protein YchF Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K232_DEHLB
GTP-binding protein YchF
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_9
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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comp(6041..6865)
-----------------
DNA (825bp)
protein (275aa)
Putative uncharacterized protein Tax=Methanoplanus limicola DSM 2279 RepID=H1YZL7_9EURY
hypothetical protein
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_10
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

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7221..8291
-----------------
DNA (1071bp)
protein (357aa)
aroF1; 3-deoxy-D-arabino heptulosonate 7-phosphate synthase (EC:2.5.1.54)
3-deoxy-D-arabino heptulosonate 7-phosphate synthase {ECO:0000313|EMBL:AGG06107.1}; EC=2.5.1.54 {ECO:0000313|EMBL:AGG06107.1};; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi DCMB5.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Dehalococcoides mccartyi RepID=A5FRZ8_DEHSB
B_1_S1_Biohub_coassembly_k141_2694881_11

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8296..9372
-----------------
DNA (1077bp)
protein (359aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJP1_DESK7
Marine sediment metagenome DNA, contig: S03H2_L01070 {ECO:0000313|EMBL:GAH45407.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_2694881_12
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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9369..10025
-----------------
DNA (657bp)
protein (219aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3N1_DEHLB
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_13

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10022..10894
-----------------
DNA (873bp)
protein (291aa)
Shikimate dehydrogenase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3N0_DEHLB
Marine sediment metagenome DNA, contig: S06H3_L00858 {ECO:0000313|EMBL:GAI14969.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
shikimate 5-dehydrogenase
B_1_S1_Biohub_coassembly_k141_2694881_14

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11008..11544
-----------------
DNA (537bp)
protein (179aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3M9_DEHLB
Marine sediment metagenome DNA, contig: S03H2_L07195 {ECO:0000313|EMBL:GAH38990.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_2694881_15
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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11519..12784
-----------------
DNA (1266bp)
protein (422aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Dehalococcoides ethenogenes (strain 195) RepID=AROA_DEHE1
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_2694881_16

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12774..13868
-----------------
DNA (1095bp)
protein (365aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N894_9ARCH
Marine sediment metagenome DNA, contig: S12H4_L01225 {ECO:0000313|EMBL:GAI85676.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_2694881_17

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13865..14932
-----------------
DNA (1068bp)
protein (356aa)
prephenate dehydratase / chorismate mutase (EC:5.4.99.5 4.2.1.51)
Chorismate mutase Tax=Dehalococcoides sp. (strain BAV1) RepID=A5FS05_DEHSB
Marine sediment metagenome DNA, contig: S06H3_C02437 {ECO:0000313|EMBL:GAH91968.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_2694881_18
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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15112..15543
-----------------
DNA (432bp)
protein (144aa)
30S ribosomal protein S12 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C4_DEHLB
30S ribosomal protein S12
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_19
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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15553..16023
-----------------
DNA (471bp)
protein (157aa)
30S ribosomal protein S7 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C3_DEHLB
30S ribosomal protein S7
Tax=RBG_13_Chloroflexi_46_14_curated
B_1_S1_Biohub_coassembly_k141_2694881_20
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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16067..18187
-----------------
DNA (2121bp)
protein (707aa)
Elongation factor G Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C2_DEHLB
translation elongation factor G
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_21

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18180..18488
-----------------
DNA (309bp)
protein (103aa)
30S ribosomal protein S10 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C1_DEHLB
Marine sediment metagenome DNA, contig: S03H2_S17096 {ECO:0000313|EMBL:GAH68510.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S10
B_1_S1_Biohub_coassembly_k141_2694881_22

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18555..19142
-----------------
DNA (588bp)
protein (196aa)
50S ribosomal protein L3 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C0_DEHLB
Marine sediment metagenome DNA, contig: S12H4_S05772 {ECO:0000313|EMBL:GAI88998.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L3
B_1_S1_Biohub_coassembly_k141_2694881_23
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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19146..19802
-----------------
DNA (657bp)
protein (219aa)
rplD; ribosomal protein L4; K02926 large subunit ribosomal protein L4 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
rplD; 50S ribosomal protein L4
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_2694881_24
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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19789..20079
-----------------
DNA (291bp)
protein (97aa)
ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
rplW; 50S ribosomal protein L23
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_25
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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20192..21019
-----------------
DNA (828bp)
protein (276aa)
50S ribosomal protein L2 Tax=Roseiflexus sp. (strain RS-1) RepID=RL2_ROSS1
rplB; 50S ribosomal protein L2
Tax=RBG_13_Chloroflexi_46_14_curated
B_1_S1_Biohub_coassembly_k141_2694881_26
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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21026..21313
-----------------
DNA (288bp)
protein (96aa)
30S ribosomal protein S19 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1B6_DEHLB
30S ribosomal protein S19
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_27

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21348..21680
-----------------
DNA (333bp)
protein (111aa)
50S ribosomal protein L22 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1B5_DEHLB
Marine sediment metagenome DNA, contig: S12H4_S13397 {ECO:0000313|EMBL:GAJ05819.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L22
B_1_S1_Biohub_coassembly_k141_2694881_28
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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21680..22807
-----------------
DNA (1128bp)
protein (376aa)
30S ribosomal protein S3 Tax=Dehalococcoides sp. (strain VS) RepID=D2BGX8_DEHSV
rpsC; 30S ribosomal protein S3
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2694881_29
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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22794..23243
-----------------
DNA (450bp)
protein (150aa)
50S ribosomal protein L16 Tax=Clostridium ultunense Esp RepID=M1YSE7_9CLOT
LSU ribosomal protein L16P
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2694881_30
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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23240..23437
-----------------
DNA (198bp)
protein (66aa)
50S ribosomal protein L29 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1B2_DEHLB
50S ribosomal protein L29
Tax=RBG_13_Chloroflexi_46_14_curated
Displaying items 1-30 of 46 in total

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