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RBG1351_12

Alias: RBG_1351c3_12

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG1351_12_1
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

Not on your lists

107..319
DNA (213bp) protein (71aa)
hypothetical protein Tax=RBG_16_Chloroflexi_50_11_curated
hypothetical protein
Putative uncharacterized protein n=5 Tax=Dehalococcoides mccartyi RepID=A5FQF5_DEHSB (db=UNIREF evalue=6.7e-12 bit_score=75.1 identity=50.0 coverage=92.95774647887323)
coiled-coil (db=Coil db_id=coil from=12 to=33 evalue=NA)
RBG1351_12_2
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

Not on your lists

404..1063
DNA (660bp) protein (220aa)
BioY protein; K03523 putative biotin biosynthesis protein BioY Tax=RBG_16_Chloroflexi_50_11_curated
BioY protein
BioY protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CDK2_KOSOT (db=UNIREF evalue=1.4e-68 bit_score=265.0 identity=60.3 coverage=87.72727272727273)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=46)
RBG1351_12_3
RBG_13_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

1405..3105
DNA (1701bp) protein (567aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RBG_13_Chloroflexi_57_8_curated
threonyl-tRNA synthetase
threonyl-tRNA synthetase
Threonine--tRNA ligase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K0J8_DEHLB (db=UNIREF evalue=1.2e-217 bit_score=761.5 identity=61.6 coverage=99.47089947089947)
RBG1351_12_4
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

Not on your lists

3291..3905
DNA (615bp) protein (205aa)
translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RBG_16_Chloroflexi_50_11_curated
infC; translation initiation factor 3 (IF-3)
Translation initiation factor IF-3 n=4 Tax=Dehalococcoides mccartyi RepID=Q3Z8G3_DEHE1 (db=UNIREF evalue=8.3e-47 bit_score=192.6 identity=59.1 coverage=76.09756097560975)
IF3 (db=PatternScan db_id=PS00938 from=30 to=43 evalue=0.0 interpro_id=IPR019813 interpro_description=Translation initiation factor 3, conserved site GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
RBG1351_12_5
RBG_13_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists


3892..4095
DNA (204bp) protein (68aa)
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_13_Chloroflexi_57_8_curated
50S ribosomal protein L35
50S ribosomal protein L35 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K0J6_DEHLB (db=UNIREF evalue=2.3e-17 bit_score=93.2 identity=67.7 coverage=94.11764705882352)
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=2.8e-18 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_12_6
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

Not on your lists


4114..4473
DNA (360bp) protein (120aa)
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RBG_16_Chloroflexi_50_11_curated
50S ribosomal protein L20
50S ribosomal protein L20 n=5 Tax=Dehalococcoides mccartyi RepID=RL20_DEHE1 (db=UNIREF evalue=4.0e-33 bit_score=146.4 identity=59.1 coverage=95.0)
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
RBG1351_12_7
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

Not on your lists


4559..5596
DNA (1038bp) protein (346aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RBG_16_Chloroflexi_50_11_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1Q0_DEHLB (db=UNIREF evalue=9.2e-115 bit_score=419.1 identity=56.8 coverage=99.13294797687861)
RBG1351_12_8
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

5599..8013
DNA (2415bp) protein (805aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RBG_13_Chloroflexi_51_18_curated
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1P9_DEHLB (db=UNIREF evalue=1.3e-223 bit_score=781.9 identity=49.1 coverage=99.75155279503105)
RBG1351_12_9

Not on your lists

comp(8133..8558)
DNA (426bp) protein (142aa)
Marine sediment metagenome DNA, contig: S12H4_L04883 {ECO:0000313|EMBL:GAI81387.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
seg (db=Seg db_id=seg from=116 to=134)
RBG1351_12_10
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

8743..9012
DNA (270bp) protein (90aa)
AbrB family transcriptional regulator Tax=RBG_13_Chloroflexi_51_18_curated
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family n=1 Tax=Methanosaeta concilii GP6 RepID=F4BT59_METCG (db=UNIREF evalue=5.3e-22 bit_score=109.0 identity=54.9 coverage=97.77777777777777)
Q3MW00_9DELT_Q3MW00; (db=BlastProDom db_id=PD058861 from=15 to=84 evalue=1.0e-18)
RBG1351_12_11
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

9029..9862
DNA (834bp) protein (278aa)
type 11 methyltransferase Tax=RBG_13_Chloroflexi_51_18_curated
type 11 methyltransferase
type 11 methyltransferase
RBG1351_12_12
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(9874..10632)
DNA (759bp) protein (253aa)
ABC-2 type transport system integral membrane protein Tax=RBG_13_Chloroflexi_51_18_curated
Putative uncharacterized protein n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GUP8_9ACTO (db=UNIREF evalue=3.8e-41 bit_score=174.1 identity=40.8 coverage=92.09486166007905)
ABC-2 type transport system integral membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
RBG1351_12_13
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(10632..11540)
DNA (909bp) protein (303aa)
ABC transporter; K09687 antibiotic transport system ATP-binding protein Tax=RBG_13_Chloroflexi_51_18_curated
ABC transporter
ABC transporter
ABC transporter related protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AZC1_STRRD (db=UNIREF evalue=4.2e-87 bit_score=327.0 identity=54.7 coverage=97.35973597359737)
RBG1351_12_14
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

11762..12292
DNA (531bp) protein (177aa)
id=4162180 Tax=GWF2_Lentisphaerae_49_21_curated
11762..12292 + ( gc_cont=0.382)
RBG1351_12_15
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(12295..13983)
DNA (1689bp) protein (563aa)
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=RBG_13_Chloroflexi_51_18_curated
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=5 Tax=Dehalococcoides mccartyi RepID=SYP_DEHSC (db=UNIREF evalue=2.6e-207 bit_score=727.2 identity=64.0 coverage=98.93428063943162)
RBG1351_12_16
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(14002..14835)
DNA (834bp) protein (278aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_18_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanoregula boonei 6A8 RepID=A7I8D8_METB6 (db=UNIREF evalue=1.8e-20 bit_score=105.5 identity=45.0 coverage=37.05035971223021)
coiled-coil (db=Coil db_id=coil from=35 to=98 evalue=NA)
RBG1351_12_17

Not on your lists

comp(14926..15984)
DNA (1059bp) protein (353aa)
Marine sediment metagenome DNA, contig: S12H4_L00330 {ECO:0000313|EMBL:GAI87726.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
seg (db=Seg db_id=seg from=137 to=152)
RBG1351_12_18
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(15988..16587)
DNA (600bp) protein (200aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RBG_16_Chloroflexi_56_11_curated
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=5 Tax=Dehalococcoides mccartyi RepID=ISPG_DEHSB (db=UNIREF evalue=6.8e-78 bit_score=295.8 identity=71.4 coverage=97.5)
seg (db=Seg db_id=seg from=167 to=179)
RBG1351_12_19
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(17111..18169)
DNA (1059bp) protein (353aa)
membrane-associated zinc metalloprotease; K01417 [EC:3.4.24.-] Tax=RBG_13_Chloroflexi_51_52_curated
peptidase
peptidase
Site-2 protease, Metallo peptidase, MEROPS family M50B n=5 Tax=Dehalococcoides mccartyi RepID=A5FS86_DEHSB (db=UNIREF evalue=1.7e-95 bit_score=355.1 identity=48.6 coverage=97.45042492917847)
RBG1351_12_20
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(18166..19329)
DNA (1164bp) protein (388aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase; K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_13_Chloroflexi_51_52_curated
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Dehalococcoides mccartyi RepID=Q3Z9I2_DEHE1 (db=UNIREF evalue=3.6e-128 bit_score=463.8 identity=59.0 coverage=96.3917525773196)
RBG1351_12_21
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(19609..20007)
DNA (399bp) protein (133aa)
glutaredoxin-like protein Tax=RBG_13_Chloroflexi_51_52_curated
glutaredoxin-like protein
Glutaredoxin-like protein, YruB-family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CES0_THET1 (db=UNIREF evalue=3.3e-20 bit_score=103.6 identity=37.1 coverage=96.99248120300751)
RBG1351_12_22
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(20151..20393)
DNA (243bp) protein (81aa)
Tax=RBG_13_Chloroflexi_51_52_curated
seg (db=Seg db_id=seg from=5 to=17)
RBG1351_12_23
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(20597..20809)
DNA (213bp) protein (71aa)
4Fe-4S ferredoxin Tax=RBG_13_Chloroflexi_51_52_curated
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein n=2 Tax=Chloroflexus RepID=A9WB05_CHLAA (db=UNIREF evalue=4.5e-08 bit_score=62.4 identity=38.7 coverage=85.91549295774648)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=42 to=53 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
RBG1351_12_24
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(20874..21545)
DNA (672bp) protein (224aa)
Transcriptional regulator, Crp/Fnr family Tax=RBG_13_Chloroflexi_51_52_curated
Transcriptional regulator, Crp/Fnr family
Putative Transcriptional regulator, Crp/Fnr family n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG67_9BACT (db=UNIREF evalue=3.6e-43 bit_score=180.6 identity=42.9 coverage=94.64285714285714)
CNMP_BINDING_1 (db=PatternScan db_id=PS00888 from=40 to=56 evalue=0.0 interpro_id=IPR018488 interpro_description=Cyclic nucleotide-binding, conserved site)
RBG1351_12_25
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(21675..22373)
DNA (699bp) protein (233aa)
putative OmpR family two-component response regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE Tax=RBG_13_Chloroflexi_51_52_curated
putative OmpR family two-component response regulator
Putative OmpR family two-component response regulator n=1 Tax=Caldilinea aerophila DSM 14535 = NBRC 104270 RepID=I0I2G0_CALAS (db=UNIREF evalue=1.2e-57 bit_score=228.8 identity=51.5 coverage=96.99570815450643)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=1 to=123 evalue=7.0e-31)
RBG1351_12_26
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(22378..22689)
DNA (312bp) protein (104aa)
Tax=RBG_13_Chloroflexi_51_52_curated
(db=HMMPfam db_id=PF00512 from=40 to=84 evalue=1.7e-05 interpro_id=IPR003661 interpro_description=Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain GO=Molecular Function: two-component sensor activity (GO:0000155), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020))
RBG1351_12_27
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(22855..23052)
DNA (198bp) protein (66aa)
Marine sediment metagenome DNA, contig: S01H4_S06821 Tax=RBG_13_Chloroflexi_51_52_curated
22855..23052 - ( gc_cont=0.409)
RBG1351_12_28
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

23721..24218
DNA (498bp) protein (166aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_52_curated
hypothetical protein (db=KEGG evalue=6.5e-18 bit_score=95.9 identity=34.5 coverage=97.59036144578313)
Putative uncharacterized protein n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z9H1_DEHE1 (db=UNIREF evalue=8.5e-18 bit_score=95.9 identity=34.5 coverage=97.59036144578313)
seg (db=Seg db_id=seg from=155 to=165)
RBG1351_12_29
RBG_13_Chloroflexi_52_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(24236..25144)
DNA (909bp) protein (303aa)
hypothetical protein Tax=RBG_13_Chloroflexi_52_12_curated
hypothetical protein
seg (db=Seg db_id=seg from=137 to=148)
RBG1351_12_30
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

25275..25994
DNA (720bp) protein (240aa)
type 11 methyltransferase Tax=RBG_13_Chloroflexi_51_18_curated
Methyltransferase type 11
Methyltransferase type 11 n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KGJ7_CYAP7 (db=UNIREF evalue=3.4e-44 bit_score=184.1 identity=38.7 coverage=96.25)
(db=HMMPfam db_id=PF08241 from=50 to=145 evalue=2.5e-23 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
Displaying items 1-30 of 45 in total

View Taxonomy