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SR-VP_26_10_2019_C_20cm_scaffold_4969

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_20cm_scaffold_4969_1
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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3..1133
DNA (1131bp) protein (377aa)
GTPase HflX n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM2_NITGG
GTP-binding protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
SR-VP_26_10_2019_C_20cm_scaffold_4969_2
unknown

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1141..1665
DNA (525bp) protein (175aa)
tRNA (cytidine(56)-2'-O)-methyltransferase n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=TRM56_NITMS
Marine sediment metagenome DNA, contig: S03H2_S09473 {ECO:0000313|EMBL:GAH71957.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SR-VP_26_10_2019_C_20cm_scaffold_4969_3
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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1662..2171
DNA (510bp) protein (170aa)
Transcription factor E n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDR9_NITGG
tfe; transcription factor E
Tax=RBG_16_Thaumarchaeota_49_8_curated
SR-VP_26_10_2019_C_20cm_scaffold_4969_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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2223..2762
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=euryarchaeote SCGC AAA261-E04 RepID=UPI0003744E88
tRNA 2'-O-methylase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
SR-VP_26_10_2019_C_20cm_scaffold_4969_5
Methanocaldococcus villosus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(2994..3329)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6V273_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ENN96378.1}; TaxID=1069083 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus villosus KIN24-T80.;"
DUF190 domain-containing protein
SR-VP_26_10_2019_C_20cm_scaffold_4969_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3338..3718)
DNA (381bp) protein (127aa)
Putative fluoride ion transporter CrcB n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK43_NITGG
crcB; camphor resistance family protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
SR-VP_26_10_2019_C_20cm_scaffold_4969_7
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3833..5221)
DNA (1389bp) protein (463aa)
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS {ECO:0000256|HAMAP-Rule:MF_01892}; Short=tRNA(Ile2)-agm2C synthetase {ECO:0000256|HAMAP-Rule:MF_01892};; EC=6.3.4.22 {ECO:0000256|HAMAP-Rule:MF_01892};; tRNA(Ile2) agmatidine synthetase {ECO:0000256|HAMAP-Rule:MF_01892}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP49_NITGG
putative DNA-binding protein containing a Zn-ribbon domain
SR-VP_26_10_2019_C_20cm_scaffold_4969_8
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(5230..5613)
DNA (384bp) protein (128aa)
Lactoylglutathione lyase n=1 Tax=mine drainage metagenome RepID=T0YPW7_9ZZZZ
lactoylglutathione lyase
Tax=RBG_16_Euryarchaeota_68_13_curated
SR-VP_26_10_2019_C_20cm_scaffold_4969_9
unknown

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comp(5643..6350)
DNA (708bp) protein (236aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_10
unknown

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comp(6347..6703)
DNA (357bp) protein (119aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_11
unknown

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comp(6796..7059)
DNA (264bp) protein (88aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_12
unknown

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comp(7727..8272)
DNA (546bp) protein (182aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_13
unknown

Not on your lists

comp(8278..11154)
DNA (2877bp) protein (959aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_14
unknown

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11596..12330
DNA (735bp) protein (245aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_15
BJP_S1_SUB10_Methanoculleus_61_9, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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12330..13355
DNA (1026bp) protein (342aa)
DNA repair and recombination protein RadB n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I6V6_METCZ
radB; DNA repair and recombination protein RadB
Tax=BJP_S1_SUB10_Methanoculleus_61_9
SR-VP_26_10_2019_C_20cm_scaffold_4969_16
unknown

Not on your lists

13355..14419
DNA (1065bp) protein (355aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_17
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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14428..17361
DNA (2934bp) protein (978aa)
Putative Mucin-19 n=1 Tax=Streptomyces afghaniensis 772 RepID=S4NNJ7_9ACTO
ATPase
ATPase {ECO:0000313|EMBL:AJT68655.1}; TaxID=1403539 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
SR-VP_26_10_2019_C_20cm_scaffold_4969_18
unknown

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17354..17602
DNA (249bp) protein (83aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_19
unknown

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17599..18078
DNA (480bp) protein (160aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_20
Blastocystis hominis, Blastocystis, Eukaryota

Not on your lists

18082..20760
DNA (2679bp) protein (893aa)
Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_0 n=1 Tax=Blastocystis hominis RepID=D8LW59_BLAHO
Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_0 {ECO:0000313|EMBL:CBK20048.2}; TaxID=12968 species="Eukaryota; Stramenopiles; Blastocystis.;" source="Blastocystis hominis.;"
SR-VP_26_10_2019_C_20cm_scaffold_4969_21
unknown

Not on your lists

20762..21355
DNA (594bp) protein (198aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_22
unknown

Not on your lists

comp(21463..22092)
DNA (630bp) protein (210aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_23
unknown

Not on your lists

comp(22653..23273)
DNA (621bp) protein (207aa)

This feature has no annotations

SR-VP_26_10_2019_C_20cm_scaffold_4969_24

Not on your lists

comp(23870..24103)
DNA (234bp) protein (78aa)
Putative transcriptional regulator, AsnC family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIK9_NITGG
AsnC family transcriptional regulator
Tax=RBG_16_Archaea_50_20_curated
SR-VP_26_10_2019_C_20cm_scaffold_4969_25
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(24185..24757)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U298_THEAM
hypothetical protein
Tax=RBG_13_Chloroflexi_50_10_curated
SR-VP_26_10_2019_C_20cm_scaffold_4969_26
RIFCSPHIGHO2_12_FULL_OP11_45_10_curated, Microgenomates, Bacteria

Not on your lists

comp(24876..25706)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LSD3_HALO1
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OP11_45_10_curated
SR-VP_26_10_2019_C_20cm_scaffold_4969_27
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

25837..26346
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AS54_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05365.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
SR-VP_26_10_2019_C_20cm_scaffold_4969_28
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

comp(26527..28836)
DNA (2310bp) protein (770aa)
quinoprotein alcohol dehydrogenase (EC:1.1.99.8)
Quinoprotein alcohol dehydrogenase {ECO:0000313|EMBL:BAJ47186.1}; EC=1.1.2.- {ECO:0000313|EMBL:BAJ47186.1};; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum subterraneum.;"
Quinoprotein alcohol dehydrogenase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4G7_9ARCH
SR-VP_26_10_2019_C_20cm_scaffold_4969_29
unknown

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comp(29305..29439)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 29 items

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