ggKbase home page

rifoxyb1_full_scaffold_1334

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxyb1_full_scaffold_1334_1
unknown

Not on your lists

1..1173
DNA (1173bp) protein (391aa)

This feature has no annotations

rifoxyb1_full_scaffold_1334_2
GWC2_OD1_41_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

1297..2946
DNA (1650bp) protein (550aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=5045697 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c rbh
Glutamate-tRNA ligase {ECO:0000313|EMBL:KKS24572.1}; TaxID=1618755 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_41_8.;"
Glutamate-tRNA ligase
Glutamate-tRNA ligase
rifoxyb1_full_scaffold_1334_3

Not on your lists


3103..3429
DNA (327bp) protein (109aa)
50S ribosomal protein L7Ae n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=RL7A_AERPE id=5103741 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L7Ae
50S ribosomal protein L7Ae
50S ribosomal protein L7Ae {ECO:0000313|EMBL:AJF63019.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifoxyb1_full_scaffold_1334_4
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists


3433..3732
DNA (300bp) protein (100aa)
30S ribosomal protein S28e n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=RS28_AERPE id=5103742 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rps28e; 30S ribosomal protein S28e; K02979 small subunit ribosomal protein S28e Tax=AR17
30S ribosomal protein S28e
30S ribosomal protein S28e
rifoxyb1_full_scaffold_1334_5
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

3735..3911
DNA (177bp) protein (59aa)
50S ribosomal protein L24e n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=RL24E_ARCFU
Ribosomal protein L24E
Ribosomal protein L24E
50S ribosomal protein L24e {ECO:0000256|HAMAP-Rule:MF_00773}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus ful
rifoxyb1_full_scaffold_1334_6

Not on your lists

3913..4392
DNA (480bp) protein (160aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:M
Nucleoside-diphosphate kinase id=5800774 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ndk2; putative nucleoside diphosphate kinase
ndk2; putative nucleoside diphosphate kinase
rifoxyb1_full_scaffold_1334_7
unknown

Not on your lists

comp(4389..5462)
DNA (1074bp) protein (358aa)

This feature has no annotations

rifoxyb1_full_scaffold_1334_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(5452..5880)
DNA (429bp) protein (143aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5048321 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_1334_9

Not on your lists

5967..6449
DNA (483bp) protein (161aa)
grpE; hypothetical protein; K03687 molecular chaperone GrpE id=5048316 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54034.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
GrpE protein
GrpE protein
rifoxyb1_full_scaffold_1334_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

6451..8280
DNA (1830bp) protein (610aa)
dnaK; chaperone DnaK; K04043 molecular chaperone DnaK Tax=CG_Woesearch_02
dnaK; molecular chaperone DnaK
dnaK; molecular chaperone DnaK
dnaK; chaperone DnaK; K04043 molecular chaperone DnaK id=5241410 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifoxyb1_full_scaffold_1334_11
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

8307..9398
DNA (1092bp) protein (364aa)
Chaperone protein DnaJ id=5800476 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized rbh
Chaperone protein DnaJ Tax=AR15
dnaJ; chaperone protein DnaJ
dnaJ; chaperone protein DnaJ
rifoxyb1_full_scaffold_1334_12
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

comp(9403..9966)
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP28288.1}; Flags: Fragment;; TaxID=1618806 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_31_28.;"
rifoxyb1_full_scaffold_1334_13
RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

10314..10982
DNA (669bp) protein (223aa)
pyruvate synthase subunit PorC (EC:1.2.7.1); K00172 pyruvate ferredoxin oxidoreductase, gamma subunit [EC:1.2.7.1] Tax=RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated
pyruvate/ketoisovalerate oxidoreductase subunit gamma (EC:1.2.7.1)
pyruvate/ketoisovalerate oxidoreductase subunit gamma (EC:1.2.7.1)
Pyruvate/ketoisovalerate oxidoreductase, gamma subunit n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E1R1_DICTD
rifoxyb1_full_scaffold_1334_14
RIFOXYA2_FULL_Elusimicrobia_40_6_curated, Elusimicrobia, Bacteria

Not on your lists

10979..11287
DNA (309bp) protein (103aa)
porD; pyruvate synthase subunit porD; K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1] Tax=RIFOXYA2_FULL_Elusimicrobia_40_6_curated
pyruvate ferredoxin oxidoreductase subunit delta (EC:1.2.7.1)
pyruvate ferredoxin oxidoreductase subunit delta (EC:1.2.7.1)
Putative uncharacterized protein n=1 Tax=uncultured candidate division JS1 bacterium RepID=G3BMN9_9BACT
rifoxyb1_full_scaffold_1334_15
Caldisericum exile, Caldisericum, Caldisericales, Caldisericia, Caldiserica, Bacteria

Not on your lists

11271..12419
DNA (1149bp) protein (383aa)
porA; pyruvate synthase subunit PorA (EC:1.2.7.1)
porA; pyruvate synthase subunit PorA (EC:1.2.7.1)
Pyruvate synthase subunit PorA {ECO:0000313|EMBL:BAL80812.1}; EC=1.2.7.1 {ECO:0000313|EMBL:BAL80812.1};; TaxID=511051 species="Bacteria; Caldiserica; Caldisericia; Caldisericales; Caldisericaceae; Cal
Pyruvate synthase subunit PorA n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GJ75_CALEA rbh
rifoxyb1_full_scaffold_1334_16
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

Not on your lists

12416..13336
DNA (921bp) protein (307aa)
Thiamine pyrophosphate protein domain protein TPP-binding protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0J4_THEOJ rbh
thiamine pyrophosphate domain-containing TPP-binding protein
thiamine pyrophosphate domain-containing TPP-binding protein
Tax=BJP_IG2158_OD1_28_51
rifoxyb1_full_scaffold_1334_17
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

13337..13705
DNA (369bp) protein (123aa)
hypothetical protein Tax=CG_Woesearch_02
transmembrane_regions 7..28 id=86730 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_1334_18

Not on your lists

13823..14431
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51202.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
Putative uncharacterized protein id=5800685 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifoxyb1_full_scaffold_1334_19
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(14514..15305)
DNA (792bp) protein (264aa)
Phage integrase family protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TN37_ALKMQ
integrase/recombinase; K04763 integrase/recombinase XerD Tax=CG_Pacearch_03
phage integrase family protein
phage integrase family protein
Displaying 19 items

View Taxonomy