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rifcsphigho2_01_scaffold_42015

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_42015_1
AR18, Woesearchaeaota, DPANN, Archaea

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comp(3..1013)
DNA (1011bp) protein (337aa)
ATPase; K06865 ATPase id=5045271 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
ATPase; K06865 ATPase Tax=AR18
ATPase
rifcsphigho2_01_scaffold_42015_2
unknown

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1100..1633
DNA (534bp) protein (178aa)

This feature has no annotations

rifcsphigho2_01_scaffold_42015_3
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(1630..2379)
DNA (750bp) protein (250aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] Tax=CG_Woesearch_02
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037BCC2D
tRNA (Adenine-57, 58-N(1)-) methyltransferase
rifcsphigho2_01_scaffold_42015_4
unknown

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comp(2591..2695)
DNA (105bp) protein (35aa)

This feature has no annotations

rifcsphigho2_01_scaffold_42015_5

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comp(2823..4601)
DNA (1779bp) protein (593aa)
Isomerizing Glutamine-fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:KKP41752.1}; TaxID=1618807 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_33_14.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=4410434 bin=GWF2_Ignavibacteria_33_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
glucosamine--fructose-6-phosphate aminotransferase
rifcsphigho2_01_scaffold_42015_6
unknown

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comp(4641..5489)
DNA (849bp) protein (283aa)
Uncharacterized membrane protein n=1 Tax=nanoarchaeote Nst1 RepID=R1FUH2_9ARCH id=5103440 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized membrane protein n=1 Tax=nanoarchaeote Nst1 RepID=R1FUH2_9ARCH Tax=AR20
hypothetical protein
rifcsphigho2_01_scaffold_42015_7

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comp(5537..6364)
DNA (828bp) protein (276aa)
Transposase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PS48_METMA
Marine sediment metagenome DNA, contig: S01H1_L02875 {ECO:0000313|EMBL:GAF82235.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
transposase
rifcsphigho2_01_scaffold_42015_8
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(6413..7012)
DNA (600bp) protein (200aa)
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=CG_Woesearch_02
prolyl-tRNA synthetase (EC:6.1.1.15)
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] id=5240603 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_42015_9

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comp(7245..7721)
DNA (477bp) protein (159aa)
Suspect SCG annotation. See neighboring gene [rifcsphigho2_01_scaffold_42015_8].
Marine sediment metagenome DNA, contig: S01H1_L09951 {ECO:0000313|EMBL:GAF93596.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Bifunctional aminoacyl-tRNA synthetase (Fragment) id=5800815 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Proline-tRNA ligase
split gene Cindy Castelle (6/8/15)
rifcsphigho2_01_scaffold_42015_10
unknown

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comp(7759..8160)
DNA (402bp) protein (134aa)

This feature has no annotations

rifcsphigho2_01_scaffold_42015_11
unknown

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8279..9724
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B35B64
rifcsphigho2_01_scaffold_42015_12
unknown

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9721..9927
DNA (207bp) protein (69aa)

This feature has no annotations

rifcsphigho2_01_scaffold_42015_13
unknown

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9899..10678
DNA (780bp) protein (260aa)

This feature has no annotations

rifcsphigho2_01_scaffold_42015_14
Nosema ceranae, Nosema, Microsporidia, Fungi

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10760..11722
DNA (963bp) protein (321aa)
Kinase family protein with arm repeat domain isoform 1 {ECO:0000313|EMBL:KKO76456.1}; TaxID=40302 species="Eukaryota; Fungi; Microsporidia; Nosematidae; Nosema.;" source="Nosema ceranae.;"
rifcsphigho2_01_scaffold_42015_15

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12203..12799
DNA (597bp) protein (199aa)
DNA primase DnaG {ECO:0000256|HAMAP-Rule:MF_00007, ECO:0000256|SAAS:SAAS00020821}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00007, ECO:0000256|SAAS:SAAS00020820};; TaxID=1579365 species="Archaea.;" sourc
DNA primase id=5048471 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_01_scaffold_42015_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

12771..13472
DNA (702bp) protein (234aa)
DNA primase Tax=CG_Woesearch_02
DNA primase id=5048471 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_01_scaffold_42015_17
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(13558..13881)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000369AAB9
hypothetical protein Tax=AR9
hypothetical protein
rifcsphigho2_01_scaffold_42015_18
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14206..15738
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSL3_METAC
Uncharacterized protein {ECO:0000313|EMBL:AKB35312.1}; TaxID=1434118 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
Periplasmic component of the Tol biopolymer transport system-like protein
rifcsphigho2_01_scaffold_42015_19
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

15820..15903
DNA (84bp) protein (28aa)
Tax=AR17
Displaying 19 items

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