ggKbase home page

rifcsphigho2_01_scaffold_4444

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_4444_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(448..1113)
DNA (666bp) protein (222aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCE0_NIAKG
oxidoreductase FAD/NAD(P)-binding domain-containing protein
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:AEW01447.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" sour
rifcsphigho2_01_scaffold_4444_2
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(1368..1727)
DNA (360bp) protein (120aa)
id=5049683 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsphigho2_01_scaffold_4444_3
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1788..2363)
DNA (576bp) protein (192aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1629717 s
3-methyladenine DNA glycosylase (EC:3.2.2.21)
Putative 3-methyladenine DNA glycosylase n=2 Tax=Desulfotomaculum RepID=F6B416_DESCC
rifcsphigho2_01_scaffold_4444_4
Arabidopsis thaliana, Arabidopsis, Brassicales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(2493..3116)
DNA (624bp) protein (208aa)
Putative glycine-rich protein n=1 Tax=Arabidopsis thaliana RepID=Q9SUX1_ARATH
Putative glycine-rich protein {ECO:0000313|EMBL:CAA22153.1}; TaxID=3702 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunner
hypothetical protein
rifcsphigho2_01_scaffold_4444_5
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(3319..3624)
DNA (306bp) protein (102aa)
methylated-DNA/protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RBG_16_Pacearchaeota_35_8_curated
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000377A6AC
methylated-DNA--protein-cysteine methyltransferase
rifcsphigho2_01_scaffold_4444_6
GWA2_OP3_50_21_curated, Omnitrophica, Bacteria

Not on your lists

comp(3640..4806)
DNA (1167bp) protein (389aa)
L-2-hydroxyglutarate dehydrogenase (EC:1.1.99.2)
FAD dependent oxidoreductase Tax=GWA2_OP3_50_21_curated
FAD dependent oxidoreductase id=126220 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
rifcsphigho2_01_scaffold_4444_7
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(4858..5757)
DNA (900bp) protein (300aa)
HtpX-2 peptidase; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=CG_Pacearch_06
Heat shock protein HtpX (EC:3.4.24.-)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376731D
rifcsphigho2_01_scaffold_4444_8
unknown

Not on your lists

comp(5850..6404)
DNA (555bp) protein (185aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4444_9
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(6409..6957)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035E1242
LemA family protein; K03744 LemA protein Tax=CG_Pacearch_06
LemA protein
rifcsphigho2_01_scaffold_4444_10
unknown

Not on your lists

comp(7001..7582)
DNA (582bp) protein (194aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4444_11
GWC2_OP11P37_13, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(8234..8914)
DNA (681bp) protein (227aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ25302.1}; TaxID=1618486 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC2_37_13.;"
rifcsphigho2_01_scaffold_4444_12
unknown

Not on your lists

9445..10179
DNA (735bp) protein (245aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4444_13
Pyrobaculum islandicum, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

10242..11156
DNA (915bp) protein (305aa)
Putative mRNA 3-end processing factor n=1 Tax=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) RepID=A1RT67_PYRIL
mRNA 3-end processing factor
Putative mRNA 3-end processing factor {ECO:0000313|EMBL:ABL88149.1}; TaxID=384616 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.;" source="Pyrobaculum i
rifcsphigho2_01_scaffold_4444_14

Not on your lists

11528..12661
DNA (1134bp) protein (378aa)
Putative queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine tra
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Putative queuine tRNA-ribosyltransferase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ID17_ACIB4
rifcsphigho2_01_scaffold_4444_15
unknown

Not on your lists

12689..14284
DNA (1596bp) protein (532aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4444_16
R_OD1_Azambacteria_40_24, Azambacteria, Parcubacteria, Bacteria

Not on your lists

14452..15207
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000378592A
transcriptional regulator TrmB
transcriptional regulator TrmB Tax=RIFCSPHIGHO2_01_FULL_OD1_Azambacteria_40_24_curated
rifcsphigho2_01_scaffold_4444_17
unknown

Not on your lists

15262..15672
DNA (411bp) protein (137aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4444_18
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

15750..16343
DNA (594bp) protein (198aa)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
rifcsphigho2_01_scaffold_4444_19
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(16309..16878)
DNA (570bp) protein (190aa)
hypothetical protein Tax=CG_Pacearch_06
hypothetical protein id=5049606 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsphigho2_01_scaffold_4444_20
GWE2_Tenericutes_38_8_curated, Tenericutes, Bacteria

Not on your lists

comp(16887..18191)
DNA (1305bp) protein (435aa)
zwf; Glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=GWE2_Tenericutes_38_8_curated
Glucose-6-phosphate 1-dehydrogenase id=4584038 bin=GWA2_Tenericute_38_26 species=Acholeplasma laidlawii genus=Acholeplasma taxon_order=Acholeplasmatales taxon_class=Mollicutes phylum=Tenericutes tax=GWA2_Tenericute_38_26 organism_group=Tenericutes organism_desc=Closest isolate is 1.5 Mb genome
rifcsphigho2_01_scaffold_4444_21
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18269..19876)
DNA (1608bp) protein (536aa)
60 kDa chaperonin n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=CH60_METMA
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=523844 species="Archaea; Euryarchaeota; Met
groEL; molecular chaperone GroEL
rifcsphigho2_01_scaffold_4444_22
unknown

Not on your lists

comp(19851..19982)
DNA (132bp) protein (44aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4444_23
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19984..20256)
DNA (273bp) protein (91aa)
10 kDa chaperonin n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9S7_METMS
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=523844 species="Archaea; Euryarchaeota; Met
chaperonin Cpn10
rifcsphigho2_01_scaffold_4444_24
RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

20555..21019
DNA (465bp) protein (155aa)
Integral membrane protein n=2 Tax=Thermosipho africanus RepID=B7IEI8_THEAB
tryptophan-rich sensory protein Tax=RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated
integral membrane protein
rifcsphigho2_01_scaffold_4444_25

Not on your lists

comp(21121..21876)
DNA (756bp) protein (252aa)
Transcriptional regulator TrmB id=5048445 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Transcriptional regulator TrmB {ECO:0000313|EMBL:KHO45479.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
transcriptional regulator TrmB
rifcsphigho2_01_scaffold_4444_26
R_OD1_Yanofskybacteria_49_25, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

21963..22553
DNA (591bp) protein (197aa)
hypothetical protein; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_25_curated
Riboflavin biosynthesis protein RibBA n=2 Tax=Clostridium RepID=D8GKC7_CLOLD
3,4-dihydroxy-2-butanone 4-phosphate synthase
rifcsphigho2_01_scaffold_4444_27
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

22625..23431
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HG26_METFS
hypothetical protein Tax=RBG_13_Planctomycetes_62_9_curated
hypothetical protein
rifcsphigho2_01_scaffold_4444_28
unknown

Not on your lists

23520..24821
DNA (1302bp) protein (434aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4444_29
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(24794..26308)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=2 Tax=Dehalococcoides mccartyi RepID=M1QM82_9CHLR
hypothetical protein Tax=CG_Pacearch_06
hypothetical protein
rifcsphigho2_01_scaffold_4444_30
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(26339..28975)
DNA (2637bp) protein (879aa)
DNA polymerase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4M7I0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AKB78739.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina h
DNA-directed DNA polymerase B
Displaying items 1-30 of 51 in total

View Taxonomy