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rifcsphigho2_01_scaffold_4893

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_4893_1
unknown

Not on your lists

comp(106..888)
DNA (783bp) protein (261aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4893_2
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

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comp(939..2423)
DNA (1485bp) protein (495aa)
prolyl-tRNA synthetase (EC:6.1.1.16); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=RBG_13_Pacearchaeota_33_26_curated
prolyl-tRNA synthetase (EC:6.1.1.16)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036AB39E
rifcsphigho2_01_scaffold_4893_3
unknown

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comp(2730..3224)
DNA (495bp) protein (165aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4893_4
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

3461..4231
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAK9_9FIRM
YcgL; K07074 Tax=RBG_13_Pacearchaeota_36_9_curated
YcgL
rifcsphigho2_01_scaffold_4893_5
unknown

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4236..4619
DNA (384bp) protein (128aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4893_6
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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4911..6209
DNA (1299bp) protein (433aa)
hypothetical protein Tax=GWA2_OD1_31_28_partial
rifcsphigho2_01_scaffold_4893_7
RIFOXYB2_FULL_Gammaproteobacteria_38_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6477..7859)
DNA (1383bp) protein (461aa)
aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYB2_FULL_Gammaproteobacteria_38_6_curated
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VR83_METIM
glutamyl-tRNA(Gln) amidotransferase, B subunit
rifcsphigho2_01_scaffold_4893_8

Not on your lists

comp(8274..9266)
DNA (993bp) protein (331aa)
Deoxyhypusine synthase, deoxyhypusine synthase {ECO:0000313|EMBL:KHO54835.1}; EC=2.5.1.46 {ECO:0000313|EMBL:KHO54835.1};; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
deoxyhypusine synthase, putative (EC:2.5.1.46); K00809 deoxyhypusine synthase [EC:2.5.1.46] id=5048269 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
deoxyhypusine synthase
rifcsphigho2_01_scaffold_4893_9
unknown

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comp(9335..10183)
DNA (849bp) protein (283aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4893_10
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(10287..11402)
DNA (1116bp) protein (372aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31) Tax=CG_Pacearch_06
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=uncultured bacterium RepID=K2CR37_9BACT
rifcsphigho2_01_scaffold_4893_11
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(11399..12436)
DNA (1038bp) protein (346aa)
hypothetical protein
id=5049706 Tax=CG_Pacearch_02
id=5049706 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_01_scaffold_4893_12
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(12583..13332)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E8U5_METMS id=5103711 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein; K09807 hypothetical protein Tax=CG_Pacearch_05
hypothetical protein
rifcsphigho2_01_scaffold_4893_13
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(13326..13919)
DNA (594bp) protein (198aa)
ArsR family transcriptional regulator Tax=CG_Pacearch_05
ArsR family transcriptional regulator id=5050187 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_01_scaffold_4893_14

Not on your lists

14025..14744
DNA (720bp) protein (240aa)
hypothetical protein; K08984 putative membrane protein id=5048693 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45356.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
integral membrane protein
rifcsphigho2_01_scaffold_4893_15
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

14769..14966
DNA (198bp) protein (66aa)
Marine sediment metagenome DNA, contig: S06H3_L01137 Tax=CG_Pacearch_02
rifcsphigho2_01_scaffold_4893_16
unknown

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14973..15557
DNA (585bp) protein (195aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4893_17
unknown

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15581..15754
DNA (174bp) protein (58aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4893_18
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

15978..17135
DNA (1158bp) protein (386aa)
UPI0003D1A785 related cluster n=1 Tax=unknown RepID=UPI0003D1A785
hypothetical protein Tax=CG_Pacearch_02
hypothetical protein
rifcsphigho2_01_scaffold_4893_19

Not on your lists

comp(17158..17580)
DNA (423bp) protein (141aa)
Marine sediment metagenome DNA, contig: S01H4_L01416 {ECO:0000313|EMBL:GAG54531.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_01_scaffold_4893_20
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(17607..18161)
DNA (555bp) protein (185aa)
TATA-box binding protein Tax=CG_Pacearch_05
2-alkenal reductase; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5048857 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
TATA-box-binding protein
rifcsphigho2_01_scaffold_4893_21
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(18195..19898)
DNA (1704bp) protein (568aa)
hypothetical protein; K10747 DNA ligase 1 [EC:6.5.1.1] Tax=CG_Pacearch_05
DNA ligase id=5800225 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP-dependent DNA ligase
rifcsphigho2_01_scaffold_4893_22
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(19963..20649)
DNA (687bp) protein (229aa)
DNA repair and recombination protein RadB n=1 Tax=nanoarchaeote Nst1 RepID=R1G2W9_9ARCH
DNA repair and recombination protein radB; K04484 DNA repair protein RadB Tax=CG_Pacearch_02
radB; DNA repair and recombination protein RadB
rifcsphigho2_01_scaffold_4893_23
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(20817..21482)
DNA (666bp) protein (222aa)
Tax=RBG_16_Pacearchaeota_35_8_curated
Displaying 23 items

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