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rifcsphigho2_01_scaffold_22867_5

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Pacearchaeota_37_200

partial RP 35 / 55 MC: 5 BSCG 5 / 51 ASCG 28 / 38
Location: 2342..3154

Top 3 Functional Annotations

Value Algorithm Source
ribosomal RNA-processing protein RRP42 (EC:3.1.13.-); K12589 exosome complex component RRP42 Tax=CG_Pacearch_03 similarity UNIPROT
DB: UniProtKB
  • Identity: 64.9
  • Coverage: 271.0
  • Bit_score: 347
  • Evalue 1.20e-92
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-); K12589 exosome complex component RRP42 id=5045737 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c similarity UNIREF
DB: UNIREF100
  • Identity: 46.4
  • Coverage: 263.0
  • Bit_score: 240
  • Evalue 1.50e-60
Ribosomal RNA-processing protein RRP42 similarity KEGG
DB: KEGG
  • Identity: 44.3
  • Coverage: 253.0
  • Bit_score: 215
  • Evalue 1.90e-53

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Taxonomy

CG_Pacearch_03 → Pacearchaeota → Archaea

Sequences

DNA sequence
Length: 813
ATGAGCACAATGGATACTTCAAACCTGACTATTGAAACTTTAAGGCAGATGTTTGAACAAGGAAAGAGATTTGACGGACGTTCTTTAAAAGATTATCGTCCAATTACCGTAGAACATAATGTTTCAAACAAGGCAGAAGGAAGCACAAGAGTAAGAATAGGAAAGACAGAGGTTCTAGCAGGAGTAAAACTTCAAGTAGGCGCACCATATCCAGACTCAAAGGATAAAGGGAACCTGATGGTTTCAGGAGATTTGCTTCCTCTTGCTTCTCCAAGATTTGAGAGCGGTCCTCCAGGTTTTAACGCGATAGAATTACCTCGTCTTGTTGACAGAGCAATAAGAGAATCAGGCATGATAGATTTTAAGAAATTAGTCATAACTGGAGAGAAAGTCTGGACAGTGATAATAGATGTATTTCCTATAAATGATGACGGCAATTTAATTGATGCGGCCACAATAGCTGCGTCTGTGGCTCTAAAAGATGCTACATTTCCCGGATTGGATAAAGACAATAATGTGGACTATCATATAAAAACGCAAAATAAACTTCCTCTATCTAAGGAAACTTTTCCAGTATCCATTAGCTTCTACAAACTTGGCTCTTCCTTGTTTTTAGACCCCACACGTGAGGAGGAAGAAGCAGCAGAAGCTAGAATAACATTTGGAATTTCACTCTGGAATGGCCAGAACATGATAAATTCCTGCCAGAAAAGAGGAGCAAAACCGCTCTCTCGGGCTGAAGTGGAATCAATGATGCCTATATTGCTTGAAAAACAGATTTATCTTAACGAAAAGCTTAAAAAGTTTTTATAA
PROTEIN sequence
Length: 271
MSTMDTSNLTIETLRQMFEQGKRFDGRSLKDYRPITVEHNVSNKAEGSTRVRIGKTEVLAGVKLQVGAPYPDSKDKGNLMVSGDLLPLASPRFESGPPGFNAIELPRLVDRAIRESGMIDFKKLVITGEKVWTVIIDVFPINDDGNLIDAATIAASVALKDATFPGLDKDNNVDYHIKTQNKLPLSKETFPVSISFYKLGSSLFLDPTREEEEAAEARITFGISLWNGQNMINSCQKRGAKPLSRAEVESMMPILLEKQIYLNEKLKKFL*