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rifcsphigho2_01_scaffold_6240

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_6240_1
GWA2_OD1_51_10, Parcubacteria, Bacteria

Not on your lists

comp(3..653)
DNA (651bp) protein (217aa)
Putative transposase Tax=GWA2_OD1_51_10
Integrase catalytic region id=5040688 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
ISCpe7, transposase
rifcsphigho2_01_scaffold_6240_2
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(701..856)
DNA (156bp) protein (52aa)
hypothetical protein
id=5103324 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_01_scaffold_6240_3
unknown

Not on your lists

957..1643
DNA (687bp) protein (229aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_4
unknown

Not on your lists

1645..2088
DNA (444bp) protein (148aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_5
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

2227..3300
DNA (1074bp) protein (358aa)
hypothetical protein Tax=AR11
putative hemolysin id=5045996 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_6240_6
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3341..5926
DNA (2586bp) protein (862aa)
putative hemolysin Tax=GWA2_Desulfovibrionales_65_9_curated
putative hemolysin id=5045996 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
outer membrane protein
rifcsphigho2_01_scaffold_6240_7
unknown

Not on your lists

comp(5929..6375)
DNA (447bp) protein (149aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_8
unknown

Not on your lists

comp(6347..6625)
DNA (279bp) protein (93aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_9

Not on your lists

comp(6705..7511)
DNA (807bp) protein (269aa)
DNA polymerase beta protein {ECO:0000313|EMBL:KHO52074.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
DNA polymerase beta domain protein region (Fragment) id=4315674 bin=GWC2_Elusimicrobia_51_8 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
DNA polymerase beta protein
rifcsphigho2_01_scaffold_6240_10
unknown

Not on your lists

7642..8226
DNA (585bp) protein (195aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_11
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

8263..9114
DNA (852bp) protein (284aa)
hypothetical protein Tax=AR11
rifcsphigho2_01_scaffold_6240_12
unknown

Not on your lists

comp(9095..9730)
DNA (636bp) protein (212aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_13
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9813..10364)
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LHT2_SYNFM
Putative uncharacterized protein Tax=AR11
hypothetical protein
rifcsphigho2_01_scaffold_6240_14
unknown

Not on your lists

10475..11233
DNA (759bp) protein (253aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_15
unknown

Not on your lists

11367..11993
DNA (627bp) protein (209aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_16
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11994..12497)
DNA (504bp) protein (168aa)
hypothetical protein Tax=AR11
rifcsphigho2_01_scaffold_6240_17
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(12583..14742)
DNA (2160bp) protein (720aa)
Xylose isomerase-like, TIM barrel domain Tax=CG_Woesearch_03
Xylose isomerase-like, TIM barrel domain id=5043952 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_6240_18
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(15054..16493)
DNA (1440bp) protein (480aa)
Putative uncharacterized protein Tax=CG_Woesearch_03
Putative uncharacterized protein id=5043950 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_6240_19
unknown

Not on your lists

comp(16554..16700)
DNA (147bp) protein (49aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6240_20

Not on your lists

comp(16701..16856)
DNA (156bp) protein (52aa)
Marine sediment metagenome DNA, contig: S01H1_S04483 {ECO:0000313|EMBL:GAF88852.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
id=5048099 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_6240_21
R_OD1_Nomurabacteria_41_18, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(16977..17933)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B4444F
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_41_18_curated
Transcriptional regulator
rifcsphigho2_01_scaffold_6240_22
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Berkelbacteria, Bacteria

Not on your lists

18046..18753
DNA (708bp) protein (236aa)
transmembrane_regions 162..184 Tax=RIFCSPLOWO2_01_FULL_Berkelbacteria_50_28_curated
transmembrane_regions 162..184 id=136544 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
Displaying 22 items

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