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rifcsphigho2_01_scaffold_1709

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_1709_1
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(1..558)
DNA (558bp) protein (186aa)
integrase catalytic region Tax=CG_Pacearch_02
Integrase catalytic region id=5049659 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_01_scaffold_1709_2
unknown

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669..845
DNA (177bp) protein (59aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_3
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

835..1041
DNA (207bp) protein (69aa)
Tax=CG_Pacearch_02
rifcsphigho2_01_scaffold_1709_4
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

1070..1336
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I9M4_METCZ id=5102926 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein Tax=CG_Pacearch_02
rifcsphigho2_01_scaffold_1709_5
unknown

Not on your lists

1317..2438
DNA (1122bp) protein (374aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_6
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2439..3425
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5HBD1_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EHB91897.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;
adenosine deaminase
rifcsphigho2_01_scaffold_1709_7
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

Not on your lists

3450..4526
DNA (1077bp) protein (359aa)
HNH endonuclease id=1882216 bin=GWE2_Bacteroidetes_29_8 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good rbh
HNH endonuclease Tax=GWE2_Bacteroidetes_29_8_curated
HNH endonuclease
rifcsphigho2_01_scaffold_1709_8
unknown

Not on your lists

4755..5009
DNA (255bp) protein (85aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_9
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(5011..5337)
DNA (327bp) protein (109aa)
DNA-binding protein Alba; K03622 archaea-specific DNA-binding protein Tax=RBG_13_Pacearchaeota_36_9_curated
DNA/RNA-binding protein Alba; K03622 archaea-specific DNA-binding protein id=5043654 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA-binding protein albA
rifcsphigho2_01_scaffold_1709_10
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(5347..5538)
DNA (192bp) protein (64aa)
Marine sediment metagenome DNA, contig: S03H2_S02065 Tax=CG_Pacearch_02
rifcsphigho2_01_scaffold_1709_11
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(5649..6617)
DNA (969bp) protein (323aa)
hypothetical protein
id=5103053 Tax=CG_Pacearch_05
id=5103053 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_01_scaffold_1709_12
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(6665..7252)
DNA (588bp) protein (196aa)
Uncharacterized protein (Fragment) Tax=CG_Pacearch_05
Uncharacterized protein (Fragment) id=5800258 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_1709_13
unknown

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comp(7212..7469)
DNA (258bp) protein (86aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_14
unknown

Not on your lists

7540..7797
DNA (258bp) protein (86aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_15
R_RIF_OD1_03_48_11, RIF-OD1-3, Parcubacteria, Bacteria

Not on your lists


7835..11188
DNA (3354bp) protein (1118aa)
leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_03_48_11_curated
hypothetical protein, partial n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037CE9F8
Leucine-tRNA ligase
rifcsphigho2_01_scaffold_1709_16
unknown

Not on your lists

11185..11538
DNA (354bp) protein (118aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_17
unknown

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11708..11854
DNA (147bp) protein (49aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_18
unknown

Not on your lists

comp(11847..12260)
DNA (414bp) protein (138aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_19
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(12262..12489)
DNA (228bp) protein (76aa)
hypothetical protein Tax=CG_Aenigma_01
transmembrane_regions 4..23 id=56721 bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rifcsphigho2_01_scaffold_1709_20
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


comp(12519..14294)
DNA (1776bp) protein (592aa)
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=CG_Pacearch_06
Alanine--tRNA ligase id=2009003 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
alanyl-tRNA synthetase
rifcsphigho2_01_scaffold_1709_21
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(14334..15230)
DNA (897bp) protein (299aa)
Marine sediment metagenome DNA, contig: S01H1_S24211 Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_01_scaffold_1709_22
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

Not on your lists

comp(15227..15916)
DNA (690bp) protein (230aa)
orotate phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=GWF2_Lentisphaerae_38_69_curated
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase id=2862324 bin=GWF2_Lentisphaerae_38_69 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
rifcsphigho2_01_scaffold_1709_23

Not on your lists

comp(15977..16303)
DNA (327bp) protein (109aa)
Marine sediment metagenome DNA, contig: S06H3_S19010 {ECO:0000313|EMBL:GAI51275.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_01_scaffold_1709_24

Not on your lists

comp(16303..16869)
DNA (567bp) protein (189aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO50869.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
vmp22; metalloproteinase, extracellular matrix glycoprotein VMP22 id=5041865 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_1709_25
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(16930..17568)
DNA (639bp) protein (213aa)
Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsphigho2_01_scaffold_1709_26
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

17667..18359
DNA (693bp) protein (231aa)
deoxyribonuclease v (EC:3.1.21.7); K05982 deoxyribonuclease V [EC:3.1.21.7] Tax=CG_Pacearch_04
endonuclease V (deoxyinosine 3'endonuclease)(deoxyribonuclease V) (DNase V) (EC:3.1.21.7)
Endonuclease V n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FJ02_9AQUI
rifcsphigho2_01_scaffold_1709_27
unknown

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comp(18350..18646)
DNA (297bp) protein (99aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_28
unknown

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comp(18643..18792)
DNA (150bp) protein (50aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_29
unknown

Not on your lists

19048..19524
DNA (477bp) protein (159aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1709_30
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


19569..21026
DNA (1458bp) protein (486aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RBG_13_Pacearchaeota_33_26_curated
methionyl-tRNA synthetase n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B6322D
methionyl-tRNA synthetase
Displaying items 1-30 of 47 in total

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