ggKbase home page

rifcsplowo2_01_scaffold_3939

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_3939_1
unknown

Not on your lists

comp(1..96)
DNA (96bp) protein (32aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_2
unknown

Not on your lists

comp(103..612)
DNA (510bp) protein (170aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_3
unknown

Not on your lists

comp(614..784)
DNA (171bp) protein (57aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_4

Not on your lists

comp(865..1326)
DNA (462bp) protein (154aa)
phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=5045877 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421};; Formyl
phosphoribosylformylglycinamidine synthase I
rifcsplowo2_01_scaffold_3939_5
unknown

Not on your lists

comp(1313..2005)
DNA (693bp) protein (231aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_6

Not on your lists

comp(2006..4357)
DNA (2352bp) protein (784aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formyl
Phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=5045878 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
purL; phosphoribosylformylglycinamidine synthase II
rifcsplowo2_01_scaffold_3939_7
unknown

Not on your lists

4467..4778
DNA (312bp) protein (104aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_8
unknown

Not on your lists

comp(4830..5321)
DNA (492bp) protein (164aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_9
unknown

Not on your lists

comp(5358..5576)
DNA (219bp) protein (73aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_10
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

5732..6778
DNA (1047bp) protein (349aa)
response regulator receiver modulated diguanylate cyclase Tax=GWA2_WOR_2_47_8_curated
Response regulator receiver modulated diguanylate cyclase id=4202903 bin=GWF2_OP3_43_52 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
putative two-component response regulator receiver protein
rifcsplowo2_01_scaffold_3939_11
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

6780..7145
DNA (366bp) protein (122aa)
Two component transcriptional regulator winged helix family n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LYN8_9FUSO
winged helix family two component transcriptional regulator; K10697 two-component system, OmpR family, response regulator RpaA Tax=GWA2_WOR_2_47_8_curated
two component transcriptional regulator, winged helix family
rifcsplowo2_01_scaffold_3939_12
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

Not on your lists

7161..9416
DNA (2256bp) protein (752aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3) id=14429034 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
putative two-component hybrid sensor and regulator Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
putative two-component sensor histidine kinase
rifcsplowo2_01_scaffold_3939_13
unknown

Not on your lists

comp(9421..10872)
DNA (1452bp) protein (484aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_14

Not on your lists

comp(10940..12148)
DNA (1209bp) protein (403aa)
Dihydrofolate synthase / folylpolyglutamate synthase {ECO:0000313|EMBL:KHO50876.1}; EC=6.3.2.12 {ECO:0000313|EMBL:KHO50876.1};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Folylpolyglutamate synthase (Fragment) n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U7E0_9EURY
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
rifcsplowo2_01_scaffold_3939_15
R_OD1_Kaiserbacteria_55_20, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12182..13381)
DNA (1200bp) protein (400aa)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_55_20_curated
rifcsplowo2_01_scaffold_3939_16
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

comp(13461..14111)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000362D490
Bacterio-opsin activator HTH domain protein Tax=GWA2_OD1_31_28_partial
transcription regulator, containing DNA-binding HTH domain
rifcsplowo2_01_scaffold_3939_17
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

14196..15251
DNA (1056bp) protein (352aa)
glucokinase; K00845 glucokinase [EC:2.7.1.2] Tax=AR9
Glucokinase n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WLG5_METH6
glucokinase
rifcsplowo2_01_scaffold_3939_18
unknown

Not on your lists

comp(15252..16313)
DNA (1062bp) protein (354aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_19

Not on your lists

16406..17284
DNA (879bp) protein (293aa)
Enoyl-[acyl-carrier protein] reductase I {ECO:0000313|EMBL:KHO50733.1}; EC=1.3.1.9 {ECO:0000313|EMBL:KHO50733.1};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
fabI; enoyl-ACP reductase (NADH) (EC:1.3.1.10 1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] id=4501470 bin=GWA2_OP3_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
rifcsplowo2_01_scaffold_3939_20
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

17291..17938
DNA (648bp) protein (216aa)
hypothetical protein; K03975 membrane-associated protein id=24413780 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein; K03975 membrane-associated protein Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
hypothetical protein
rifcsplowo2_01_scaffold_3939_21
unknown

Not on your lists

comp(18077..18688)
DNA (612bp) protein (204aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_22
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(18727..19068)
DNA (342bp) protein (114aa)
response regulator receiver protein id=14424850 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
response regulator receiver protein Tax=CSP1_2_Dadabacteria
rifcsplowo2_01_scaffold_3939_23
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19104..19412)
DNA (309bp) protein (103aa)
dioxygenase, ferredoxin subunit Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative Rieske-type ferredoxin id=4345526 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
dioxygenase, ferredoxin subunit
rifcsplowo2_01_scaffold_3939_24

Not on your lists

19674..20006
DNA (333bp) protein (111aa)
sulfurtransferase n=1 Tax=Salisaeta longa RepID=UPI0003B2ECB3
Uncharacterized protein {ECO:0000313|EMBL:KKM75424.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
rifcsplowo2_01_scaffold_3939_25
RBG_16_Chloroflexi_47_49_curated, Chloroflexi, Bacteria

Not on your lists

comp(20011..21123)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00036F7985
hypothetical protein Tax=RBG_16_Chloroflexi_47_49_curated
hypothetical protein
rifcsplowo2_01_scaffold_3939_26
unknown

Not on your lists

21306..21866
DNA (561bp) protein (187aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3939_27
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(21928..22407)
DNA (480bp) protein (160aa)
cytochrome c oxidase subunit II (EC:1.9.3.1)
cytochrome C oxidase subunit II Tax=RBG_16_Micrarchaeota_49_10_curated
Uncharacterized protein id=5799602 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_3939_28
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(22475..22684)
DNA (210bp) protein (70aa)
hypothetical protein Tax=AR11
rifcsplowo2_01_scaffold_3939_29
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22700..22939)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI00036963AC
Glutamate synthase {ECO:0000313|EMBL:AHK17671.1}; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-15.;"
CDGSH-type iron-binding zinc finger protein
rifcsplowo2_01_scaffold_3939_30
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(23007..23291)
DNA (285bp) protein (95aa)
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein Tax=AR11
ferredoxin; K05337 ferredoxin id=5048736 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein
Displaying 30 items

View Taxonomy