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rifcsplowo2_01_scaffold_11137

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_11137_1

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comp(205..699)
DNA (495bp) protein (165aa)
Marine sediment metagenome DNA, contig: S01H1_S08790 {ECO:0000313|EMBL:GAG12683.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
id=5041691 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_11137_2

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comp(701..1240)
DNA (540bp) protein (180aa)
Marine sediment metagenome DNA, contig: S01H1_S08790 {ECO:0000313|EMBL:GAG12683.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
id=5041691 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_11137_3
AR9, Woesearchaeaota, DPANN, Archaea

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comp(1240..1830)
DNA (591bp) protein (197aa)
Tax=AR9
rifcsplowo2_01_scaffold_11137_4
unknown

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comp(1922..3070)
DNA (1149bp) protein (383aa)

This feature has no annotations

rifcsplowo2_01_scaffold_11137_5

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comp(3129..3491)
DNA (363bp) protein (121aa)
Minimal nucleotidyltransferase fused to HEPN protein
Uncharacterized protein {ECO:0000313|EMBL:KHO45579.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein id=5047130 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_11137_6

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comp(3458..4963)
DNA (1506bp) protein (502aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51261.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein id=5047130 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Minimal nucleotidyltransferase fused to HEPN protein
rifcsplowo2_01_scaffold_11137_7
R_OD1_Falkowbacteria_39_33, Falkowbacteria, Parcubacteria, Bacteria

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5005..6264
DNA (1260bp) protein (420aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Falkowbacteria_39_33_curated
Uncharacterized protein id=5799556 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_11137_8
R_OD1_Kaiserbacteria_54_11b, Kaiserbacteria, Parcubacteria, Bacteria

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6464..8113
DNA (1650bp) protein (550aa)
lecithin:cholesterol acyltransferase Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_54_11b_curated
rifcsplowo2_01_scaffold_11137_9
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(8100..9104)
DNA (1005bp) protein (335aa)
Transcriptional regulator n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TC38_9EURY
Lrp/AsnC family transcription regulator Tax=RBG_13_Pacearchaeota_36_9_curated
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
rifcsplowo2_01_scaffold_11137_10
GWA2_OD1_45_21, Giovannonibacteria, Parcubacteria, Bacteria

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9201..10958
DNA (1758bp) protein (586aa)
Radical SAM/B12 binding domain protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKC8_TISMK
Radical SAM/B12 binding domain protein Tax=GWA2_OD1_45_21
radical SAM/B12 binding domain protein
rifcsplowo2_01_scaffold_11137_11
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(11328..12638)
DNA (1311bp) protein (437aa)
IS66 family element, transposase n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z2R1_9EURY
transposase IS66 family Tax=CG_Woesearch_01
transposase IS66 family
rifcsplowo2_01_scaffold_11137_12
Thermoplasma volcanium, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(12625..12780)
DNA (156bp) protein (52aa)
transposon-encoded protein n=1 Tax=Thermoplasma volcanium RepID=UPI0000164D2F
transposon-encoded protein
Transposase {ECO:0000313|EMBL:BAB59284.1}; TaxID=273116 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma.;" source="Thermoplasma volcanium (strain A
rifcsplowo2_01_scaffold_11137_13

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12949..13605
DNA (657bp) protein (219aa)
id=5047476 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Cell wall surface anchor family protein {ECO:0000313|EMBL:KHO55611.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_11137_14
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(13704..13877)
DNA (174bp) protein (58aa)
50S ribosomal protein L37e n=1 Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=RL37_META3
rpl37e; 50S ribosomal protein L37; K02922 large subunit ribosomal protein L37e Tax=RBG_16_Micrarchaeota_49_10_curated
rpl37e; 50S ribosomal protein L37
rifcsplowo2_01_scaffold_11137_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(13879..14106)
DNA (228bp) protein (76aa)
snRNP Sm-like protein; K04796 small nuclear ribonucleoprotein Tax=RBG_13_Woesearchaeota_36_6_curated
Sm ribonucleoprotein-like protein; K04796 small nuclear ribonucleoprotein id=5048697 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Like-Sm ribonucleoprotein core
rifcsplowo2_01_scaffold_11137_16
R_OP11_Gottesmanbacteria_39_11, Gottesmanbacteria, Microgenomates, Bacteria

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14215..14496
DNA (282bp) protein (94aa)
bifunctional AroA(G) protein; K04516 chorismate mutase [EC:5.4.99.5] Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_39_11_curated
tyrA; chorismate mutase/prephenate dehydratase (EC:5.4.99.5); K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] id=73449 bin=ACD51 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
chorismate mutase
rifcsplowo2_01_scaffold_11137_17
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

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comp(14493..15470)
DNA (978bp) protein (326aa)
Putative tRNA pseudouridine synthase B {ECO:0000313|EMBL:KKU47144.1}; Flags: Fragment;; TaxID=1618838 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
Probable tRNA pseudouridine synthase B id=5799607 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative tRNA pseudouridine synthase B
rifcsplowo2_01_scaffold_11137_18
unknown

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15524..16408
DNA (885bp) protein (295aa)

This feature has no annotations

Displaying 18 items

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