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rifcsplowo2_01_scaffold_20068

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_20068_1

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comp(3..242)
DNA (240bp) protein (80aa)
Elongation factor 1-beta n=2 Tax=Methanobacterium RepID=K2RST2_METFO id=5103134 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Elongation factor 1-beta
Elongation factor 1-beta {ECO:0000256|HAMAP-Rule:MF_00043, ECO:0000256|SAAS:SAAS00044427}; Short=EF-1-beta {ECO:0000256|HAMAP-Rule:MF_00043};; aEF-1beta {ECO:0000256|HAMAP-Rule:MF_00043}; TaxID=157937
rifcsplowo2_01_scaffold_20068_2

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comp(449..1132)
DNA (684bp) protein (228aa)
RNA 3'-terminal phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; Short=RNA cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; Short=RNA-3'-phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; EC=6.5.1.4
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase id=5800817 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_20068_3
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1679..2413
DNA (735bp) protein (245aa)
Putative membrane-associated protein/domain protein n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXN9_METHD
putative membrane-associated protein/domain protein
Putative membrane-associated protein/domain protein {ECO:0000313|EMBL:AGB49871.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylov
rifcsplowo2_01_scaffold_20068_4
GWF2_WWE1X_40_14_curated, WWE1X, Bacteria

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2451..4454
DNA (2004bp) protein (668aa)
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49] Tax=GWF2_WWE1X_40_14_curated
Urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase id=4270293 bin=GWF2_WWE1_40_14 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_WWE1_40_14 organism_group=WWE1 rbh
rifcsplowo2_01_scaffold_20068_5
R_OP11_Levybacteria_42_15, Levybacteria, Microgenomates, Bacteria

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4457..4843
DNA (387bp) protein (129aa)
hypothetical protein; K06934 Tax=RIFCSPLOWO2_01_FULL_OP11_Levybacteria_42_15_curated
hypothetical protein; K06934 id=17110415 bin=RBG_16_Aminicenantes_63_14 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
rifcsplowo2_01_scaffold_20068_6
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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4914..5810
DNA (897bp) protein (299aa)
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_01_scaffold_20068_7
AR10, Diapherotrites, DPANN, Archaea

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comp(5811..6488)
DNA (678bp) protein (226aa)
hypothetical protein
hypothetical protein; K06930 id=5241300 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein; K06930 Tax=AR10
rifcsplowo2_01_scaffold_20068_8
unknown

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comp(6553..6936)
DNA (384bp) protein (128aa)

This feature has no annotations

rifcsplowo2_01_scaffold_20068_9
AR9, Woesearchaeaota, DPANN, Archaea

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comp(6936..7295)
DNA (360bp) protein (120aa)
Tax=AR9
rifcsplowo2_01_scaffold_20068_10
Metallosphaera yellowstonensis, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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comp(7319..7723)
DNA (405bp) protein (135aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C2D5_9CREN
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
rifcsplowo2_01_scaffold_20068_11
AR11, Woesearchaeaota, DPANN, Archaea

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comp(7720..8169)
DNA (450bp) protein (150aa)
riboflavin synthase (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=AR11
Riboflavin synthase n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7F7_METTP
ribC; riboflavin synthase
rifcsplowo2_01_scaffold_20068_12
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

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comp(8166..8795)
DNA (630bp) protein (210aa)
MarR family transcriptional regulator (EC:2.7.1.161); K07732 riboflavin kinase, archaea type [EC:2.7.1.161] Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
riboflavin/FAD biosynthesis transcriptional regulator (EC:2.7.1.161)
Riboflavin kinase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I893_METCZ
rifcsplowo2_01_scaffold_20068_13
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(8850..11807)
DNA (2958bp) protein (986aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI00031F7A3C
putative transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
type II restriction enzyme methyltransferase subunit
rifcsplowo2_01_scaffold_20068_14
AR11, Woesearchaeaota, DPANN, Archaea

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comp(11865..12332)
DNA (468bp) protein (156aa)
hypothetical protein
Uncharacterized protein Tax=AR11
NMD3-related protein (nonsense mediated mRNA decay); K07562 nonsense-mediated mRNA decay protein 3 id=5043728 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_20068_15
CG_Woesearch_01, Woesearchaeota, Archaea

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12467..13111
DNA (645bp) protein (215aa)
peptidase S26B, signal peptidase; K13280 signal peptidase, endoplasmic reticulum-type [EC:3.4.-.-] Tax=CG_Woesearch_01
hypothetical protein
Peptidase S26B, eukaryotic signal peptidase id=5043727 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_20068_16
AR11, Woesearchaeaota, DPANN, Archaea

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13152..13469
DNA (318bp) protein (106aa)
transcription termination factor Tfs (EC:2.7.7.6); K03057 transcription elongation factor Tax=AR11
DNA-directed RNA polymerase subunit id=5799719 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Transcription-associated protein TFIIS
rifcsplowo2_01_scaffold_20068_17

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13541..13837
DNA (297bp) protein (99aa)
UPF0235 protein PF1765 n=2 Tax=Pyrococcus furiosus RepID=Y1765_PYRFU
Uncharacterized protein {ECO:0000313|EMBL:KHO51431.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein
Displaying 17 items

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