ggKbase home page

rifcsplowo2_01_scaffold_37175

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_37175_1
R_OD1_Nomurabacteria_40_12, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(123..842)
DNA (720bp) protein (240aa)
hypothetical protein; K07090 Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_40_12_curated
hypothetical protein; K07090 id=5045801 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_37175_2

Not on your lists

comp(839..1216)
DNA (378bp) protein (126aa)
Methylmalonyl-CoA decarboxylase gamma chain n=1 Tax=Thermococcus sp. AM4 RepID=B7R2N3_9EURY
Biotin/lipoyl attachment protein {ECO:0000313|EMBL:KHO50319.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
methylmalonyl-CoA decarboxylase subunit gamma
rifcsplowo2_01_scaffold_37175_3

Not on your lists

comp(1231..2751)
DNA (1521bp) protein (507aa)
Propionyl-CoA carboxylase carboxyltransferase subunit {ECO:0000313|EMBL:KHO50320.1}; EC=6.4.1.3 {ECO:0000313|EMBL:KHO50320.1};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Acetyl-CoA carboxylase alpha subunit n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RAJ4_THETN
AccA; acetyl-CoA carboxylase subunit alpha
rifcsplowo2_01_scaffold_37175_4
unknown

Not on your lists

2888..3664
DNA (777bp) protein (259aa)

This feature has no annotations

rifcsplowo2_01_scaffold_37175_5
unknown

Not on your lists

3988..4101
DNA (114bp) protein (38aa)

This feature has no annotations

rifcsplowo2_01_scaffold_37175_6
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

4115..4237
DNA (123bp) protein (41aa)
hypothetical protein Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsplowo2_01_scaffold_37175_7
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4238..4480
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TUL7_METAC
RelE/StbE replicon stabilization toxin {ECO:0000313|EMBL:AKB26675.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="M
RelE protein
rifcsplowo2_01_scaffold_37175_8
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(4567..5319)
DNA (753bp) protein (251aa)
DNA repair and recombination protein RadB n=1 Tax=nanoarchaeote Nst1 RepID=R1G2W9_9ARCH
DNA repair and recombination protein RadB Tax=CG_Woesearch_01
radB; DNA repair and recombination protein RadB
rifcsplowo2_01_scaffold_37175_9
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(5612..6940)
DNA (1329bp) protein (443aa)
Glucomannan 4-beta-mannosyltransferase Tax=AR11
glycosyltransferase id=5040560 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
glycosyltransferase
rifcsplowo2_01_scaffold_37175_10
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(6945..8186)
DNA (1242bp) protein (414aa)
Polysaccharide deacetylase Tax=AR11
glycosyl transferase family 2
Glycosyl transferase, group 2 family protein/polysaccharide deacetylase family protein id=3400125 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsplowo2_01_scaffold_37175_11
unknown

Not on your lists

comp(8445..8789)
DNA (345bp) protein (115aa)

This feature has no annotations

rifcsplowo2_01_scaffold_37175_12
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

8862..10118
DNA (1257bp) protein (419aa)
hypothetical protein id=5041885 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein Tax=AR4
hypothetical protein
rifcsplowo2_01_scaffold_37175_13
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10090..10527)
DNA (438bp) protein (146aa)
Putative transcription factor, MBF1 like protein n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HQL5_ACIS0 id=5103321 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Transcriptional regulator, XRE family Tax=AR11
hypothetical protein
rifcsplowo2_01_scaffold_37175_14
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

10602..11645
DNA (1044bp) protein (348aa)
RNA polymerase sigma factor n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W2G5_9CYAN
sigma-70 family RNA polymerase sigma factor Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
RNA polymerase, sigma subunit, RpsC/SigC
rifcsplowo2_01_scaffold_37175_15
Crassostrea gigas, Crassostrea, Ostreoida, Pteriomorphia, Mollusca, Metazoa

Not on your lists

comp(11687..13615)
DNA (1929bp) protein (643aa)
Serine protease inhibitor dipetalogastin n=1 Tax=Crassostrea gigas RepID=K1PRF2_CRAGI
Serine protease inhibitor dipetalogastin {ECO:0000313|EMBL:EKC18990.1}; TaxID=29159 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida; Ostreoidea; Ostreidae; Cr
hypothetical protein
rifcsplowo2_01_scaffold_37175_16
unknown

Not on your lists

13714..14322
DNA (609bp) protein (203aa)

This feature has no annotations

Displaying 16 items

View Taxonomy