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rifcsplowo2_01_scaffold_31174

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_31174_1
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1..2403)
DNA (2403bp) protein (801aa)
UPI0003D1AECA related cluster n=1 Tax=unknown RepID=UPI0003D1AECA
Uncharacterized protein {ECO:0000313|EMBL:AKB79666.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina h
rifcsplowo2_01_scaffold_31174_2
unknown

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comp(2405..2806)
DNA (402bp) protein (134aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_3
unknown

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comp(2803..3507)
DNA (705bp) protein (235aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_4
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3504..4454)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TP74_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM05445.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ac
rifcsplowo2_01_scaffold_31174_5
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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comp(4960..5550)
DNA (591bp) protein (197aa)
50S ribosomal protein L15e {ECO:0000313|EMBL:KKU99679.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
50S ribosomal protein L15e id=5799715 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Ribosomal protein L15E
rifcsplowo2_01_scaffold_31174_6

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comp(5924..6511)
DNA (588bp) protein (196aa)
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Tr
transcription factor E; K03136 transcription initiation factor TFIIE subunit alpha id=5041815 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transcription factor E
rifcsplowo2_01_scaffold_31174_7
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6643..7386)
DNA (744bp) protein (248aa)
GTP-binding protein YlqF; K06948 Tax=RBG_13_Woesearchaeota_36_6_curated
GTP-binding protein YlqF; K06948 id=5047469 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
GTP-binding protein YlqF
rifcsplowo2_01_scaffold_31174_8
unknown

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7497..8168
DNA (672bp) protein (224aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_9

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comp(8179..8649)
DNA (471bp) protein (157aa)
id=5045783 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46396.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_31174_10

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comp(8646..9197)
DNA (552bp) protein (184aa)
hypothetical protein
id=5045784 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46397.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_31174_11

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comp(9237..11129)
DNA (1893bp) protein (631aa)
Putative DNA helicase id=5800576 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61907.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
helicase
rifcsplowo2_01_scaffold_31174_12
unknown

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comp(11163..11588)
DNA (426bp) protein (142aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_13
RBG_13_OP3X_46_9_curated, OP3X, Bacteria

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11687..11857
DNA (171bp) protein (57aa)
hypothetical protein
hypothetical protein Tax=RBG_13_OP3X_46_9_curated
hypothetical protein id=4331081 bin=GWA2_OP3_53_43 species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
rifcsplowo2_01_scaffold_31174_14
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

Not on your lists

comp(11847..12515)
DNA (669bp) protein (223aa)
HAD superfamily (subfamily IA) hydrolase, TIGR02253; K07025 putative hydrolase of the HAD superfamily Tax=RBG_13_WOR_3_43_14_curated
hypothetical protein
HAD superfamily (subfamily IA) hydrolase, TIGR02253; K07025 putative hydrolase of the HAD superfamily id=5241563 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_31174_15
unknown

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comp(12547..13701)
DNA (1155bp) protein (385aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_16
AR9, Woesearchaeaota, DPANN, Archaea

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14022..14360
DNA (339bp) protein (113aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] Tax=AR9
peptidyl-tRNA hydrolase (EC:3.1.1.29); K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] id=5043642 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Peptidyl-tRNA hydrolase
rifcsplowo2_01_scaffold_31174_17
unknown

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14707..14904
DNA (198bp) protein (66aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_18
unknown

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14955..15290
DNA (336bp) protein (112aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_19
unknown

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15780..18251
DNA (2472bp) protein (824aa)

This feature has no annotations

rifcsplowo2_01_scaffold_31174_20
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

18285..18923
DNA (639bp) protein (213aa)
Putative uncharacterized protein Tax=RBG_16_Micrarchaeota_36_9_curated
Putative uncharacterized protein id=5048724 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_31174_21
R_OD1_Nomurabacteria_36_29, Nomurabacteria, Parcubacteria, Bacteria

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comp(18927..19484)
DNA (558bp) protein (186aa)
Protein-disulfide isomerase n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DWL0_METI4
dsbG; protein-disulfide isomerase Tax=RIFCSPHIGHO2_02_FULL_OD1_Nomurabacteria_36_29_curated
dsbG; protein-disulfide isomerase
Displaying 21 items

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